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XDK+Orf1a:T708I, S:F456L(20 seqs, 2 countries, 10 with S:A260V) #1467

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aviczhl2 opened this issue Mar 25, 2024 · 5 comments
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XDK+Orf1a:T708I, S:F456L(20 seqs, 2 countries, 10 with S:A260V) #1467

aviczhl2 opened this issue Mar 25, 2024 · 5 comments
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combo It has a couple of mutation in RBD S:456 S:572 To be proposed Green light for proposal XDK
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XDK.4.1

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@aviczhl2
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aviczhl2 commented Mar 25, 2024 •
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XDK+C25626T+C2388T(Orf1a:T708I)+ T22928C(S:F456L)

GISAID query:C2388T, T22928C,C25626T(edited)
No. of seqs: 6(France)

First: EPI_ISL_18913117, 2024-1-24
Latest: EPI_ISL_19006283, 2024-3-11

GISAID query for S:A260V branch: C22341T,C3510T,C18646T, T22928C(4 seqs)

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@aviczhl2 aviczhl2 changed the title XDK+Orf1a:T708I,A1082V, Orf1b:P1727S, S:F456L(6 seqs, France) XDK+Orf1a:T708I,A1082V, Orf1b:P1727S, S:F456L(6 seqs, France, 4 with S:A260V) Mar 25, 2024
@FedeGueli FedeGueli added the XDK label Mar 26, 2024
@aviczhl2
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aviczhl2 commented Apr 9, 2024

+6 on S:A260V branch

@aviczhl2 aviczhl2 changed the title XDK+Orf1a:T708I,A1082V, Orf1b:P1727S, S:F456L(6 seqs, France, 4 with S:A260V) XDK+Orf1a:T708I,A1082V, Orf1b:P1727S, S:F456L(12 seqs, France, 10 with S:A260V) Apr 9, 2024
@FedeGueli
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It is weird that oldest sequences of this were already with S:A260V ,

@aviczhl2 aviczhl2 changed the title XDK+Orf1a:T708I,A1082V, Orf1b:P1727S, S:F456L(12 seqs, France, 10 with S:A260V) XDK+Orf1a:T708I, S:F456L(12 seqs, France, 10 with S:A260V) Apr 11, 2024
@aviczhl2
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The tree splits and one more seq comes from Luxembourg

@aviczhl2 aviczhl2 changed the title XDK+Orf1a:T708I, S:F456L(12 seqs, France, 10 with S:A260V) XDK+Orf1a:T708I, S:F456L(13 seqs, 2 countries, 10 with S:A260V) Apr 11, 2024
@FedeGueli FedeGueli added the combo It has a couple of mutation in RBD label Apr 12, 2024
@FedeGueli
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Please propose it.

@FedeGueli FedeGueli added the To be proposed Green light for proposal label Apr 12, 2024
@aviczhl2 aviczhl2 mentioned this issue Apr 12, 2024
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@FedeGueli FedeGueli mentioned this issue May 13, 2024
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@FedeGueli FedeGueli changed the title XDK+Orf1a:T708I, S:F456L(13 seqs, 2 countries, 10 with S:A260V) XDK+Orf1a:T708I, S:F456L(20 seqs, 2 countries, 10 with S:A260V) May 15, 2024
@aviczhl2 aviczhl2 added this to the XDK.4.1 milestone May 28, 2024
@FedeGueli
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Designated XDK.4.1 via cov-lineages/pango-designation@480f4d9

FedeGueli referenced this issue in cov-lineages/pango-designation May 28, 2024
@corneliusroemer
Designate XDK.4 (C25626T), XDK.4.1 (S:F456L, France/Luxembourg)
480f4d9
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combo It has a couple of mutation in RBD S:456 S:572 To be proposed Green light for proposal XDK
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