Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Recent XBB.1.5.92 or (XBB.1.5+C823T??) with S:E554K spreading from Ecuador (57 seqs) #170

Closed
FedeGueli opened this issue Jun 12, 2023 · 6 comments

Comments

@FedeGueli
Copy link

FedeGueli commented Jun 12, 2023

Tree:
https://nextstrain.org/fetch/genome.ucsc.edu/trash/ct/subtreeAuspice1_genome_1dd30_717d50.json?label=id:node_6701095
Schermata 2023-06-12 alle 15 13 53

Defining mutations:
XBB.1.5.92 [C823T , Orf1a:T1168I (C3768T), C10615T ]> S:E554K (G23222A)

Gisaid query: C3768T ,G23222A (18 on Gisaid , 22 on Usher)

Country:
Schermata 2023-06-12 alle 15 18 22

@FedeGueli FedeGueli changed the title Recent XBB.1.5 with S:E554K spreading from Ecuador (18 seqs) Recent XBB.1.5 with S:E554K spreading from Ecuador (29 seqs) Jun 21, 2023
@FedeGueli FedeGueli changed the title Recent XBB.1.5 with S:E554K spreading from Ecuador (29 seqs) Recent XBB.1.5 with S:E554K spreading from Ecuador (39 seqs) Jul 2, 2023
@FedeGueli FedeGueli changed the title Recent XBB.1.5 with S:E554K spreading from Ecuador (39 seqs) Recent XBB.1.5 with S:E554K spreading from Ecuador (42 seqs) Jul 4, 2023
@FedeGueli
Copy link
Author

Now also in Dominican Republic and Guatemala

@FedeGueli FedeGueli changed the title Recent XBB.1.5 with S:E554K spreading from Ecuador (42 seqs) Recent XBB.1.5 + Orf1a:T1168I with S:E554K spreading from Ecuador (42 seqs) Jul 5, 2023
@FedeGueli FedeGueli changed the title Recent XBB.1.5 + Orf1a:T1168I with S:E554K spreading from Ecuador (42 seqs) Recent XBB.1.5 + Orf1a:T1168I with S:E554K spreading from Ecuador (52 seqs) Jul 7, 2023
@FedeGueli
Copy link
Author

this is around 10% after June 15 in Ecuaador. ping @corneliusroemer

@FedeGueli FedeGueli changed the title Recent XBB.1.5 + Orf1a:T1168I with S:E554K spreading from Ecuador (52 seqs) Recent XBB.1.5.92 with S:E554K spreading from Ecuador (52 seqs) Jul 12, 2023
@FedeGueli FedeGueli changed the title Recent XBB.1.5.92 with S:E554K spreading from Ecuador (52 seqs) Recent XBB.1.5.92 with S:E554K spreading from Ecuador (57 seqs) Jul 13, 2023
@FedeGueli
Copy link
Author

New samples from Colombia, Us and Canada

@FedeGueli FedeGueli changed the title Recent XBB.1.5.92 with S:E554K spreading from Ecuador (57 seqs) Recent XBB.1.5.92 or (XBB.1.5+C823T??) with S:E554K spreading from Ecuador (57 seqs) Jul 15, 2023
@FedeGueli FedeGueli added this to the XBB.1.5.99 milestone Jul 26, 2023
@FedeGueli FedeGueli modified the milestones: XBB.1.5.99, HQ.1 Jul 26, 2023
@ciscorucinski
Copy link

ciscorucinski commented Aug 30, 2023

@FedeGueli can you modify the title of the milestone not to include an additional space? When grabbing the milestones from the GitHub API, the title shows as HQ.1

{
  "number": 44,
  "title": " HQ.1",
  ...
}

https://github.com/sars-cov-2-variants/lineage-proposals/milestone/44

@FedeGueli FedeGueli modified the milestones: HQ.1, HQ.1 Aug 30, 2023
@FedeGueli
Copy link
Author

@FedeGueli can you modify the title of the milestone not to include an additional space? When grabbing the milestones from the GitHub API, the title shows as HQ.1

{
  "number": 44,
  "title": " HQ.1",
  ...
}

https://github.com/sars-cov-2-variants/lineage-proposals/milestone/44

i dont see any space but i have redone it.

@ciscorucinski
Copy link

Thank you. A simple rename of milestone 44 should have been sufficient, but creating a new milestone should also be okay

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Projects
None yet
Development

No branches or pull requests

2 participants