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XEC + S:K182R (6 , 4 countries) #1869

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FedeGueli opened this issue Aug 13, 2024 · 2 comments
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XEC + S:K182R (6 , 4 countries) #1869

FedeGueli opened this issue Aug 13, 2024 · 2 comments
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s:182 XEC
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XEC.1

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@FedeGueli
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There is a sublineage of XEC that apparently spread from France to Canada and Ireland
Defining mutations: XEC> Orf1a:A599T (G2060A)> A424G, C12809T, A22107G, C22414T
Query: A424G,C12809T
Samples: 5
First: collected on 2024-07-15 in Strasbourg France
Countries: France , Ireland, Canada

Tree:
Screenshot 2024-08-13 alle 08 43 49
https://nextstrain.org/fetch/genome-test.gi.ucsc.edu/trash/ct/subtreeAuspice1_genome_test_13340_afead0.json?label=id:node_7015933
@FedeGueli FedeGueli changed the title XEC + S:K182R (5 , 3 countries) XEC + S:K182R (6 , 4 countries) Aug 14, 2024
@FedeGueli
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+1 Denmark

@aviczhl2
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aviczhl2 commented Aug 14, 2024 •
edited by FedeGueli
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Designated XEC.1 via cov-lineages/pango-designation@9b9cd84

@aviczhl2 aviczhl2 added this to the XEC.1 milestone Aug 14, 2024
NkRMnZr referenced this issue in cov-lineages/pango-designation Aug 15, 2024
@corneliusroemer
Designate XEC.1 (S:K182R, ORF1a:L4182F, France/Ireland/Canada)
9b9cd84
@aviczhl2 aviczhl2 mentioned this issue Sep 25, 2024
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@aviczhl2 @FedeGueli