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update to miniforge
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mschatz committed Sep 9, 2024
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Expand Up @@ -90,9 +90,9 @@ On linux or mac I *highly* recommend that you use bioconda to install the packag
The easiest way to install conda is with [Miniconda](https://docs.conda.io/en/latest/miniconda.html). For M1 macs, you must use the x86 installation in emulation mode since M1/arm support is still limited. For this you will use the "Rosette 2" subsystem that will convert M1 arm instructions into x86_64 on the fly. Rosette will be automatically installed when you go to run it. I also recommend using [mamba](https://github.com/mamba-org/mamba) instead of the default `conda` command for installing new packages:

```
## Replace MacOS-x86_64 with the version you downloaded from https://github.com/conda-forge/miniforge#mambaforge
$ chmod +x ./Mambaforge-MacOSX-x86_64.sh
$ ./Mambaforge-MacOSX-x86_64.sh
## Replace MacOS-x86_64 with the version you downloaded from https://github.com/conda-forge/miniforge
$ chmod +x ./Miniforge-MacOSX-x86_64.sh
$ ./Miniforge-MacOSX-x86_64.sh
## After mamba is installed add bioconda as a default channel
$ conda config --add channels conda-forge
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