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HaoCheng Yu
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###XSEDE Stampede3 (Sapphire Rapids HBM) | ||
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set (SCHISM_EXE_BASENAME pschism_STAM3 CACHE STRING "Base name (modules and file extension to be added of the executable. If you want a machine name, add it here") | ||
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###Relative paths won't work | ||
set(CMAKE_Fortran_COMPILER ifx CACHE PATH "Path to serial Fortran compiler") | ||
set(CMAKE_C_COMPILER icx CACHE PATH "Path to serial C compiler") | ||
set(NetCDF_FORTRAN_DIR "$ENV{TACC_NETCDF_LIB}" CACHE PATH "Path to NetCDF Fortran library") | ||
set(NetCDF_C_DIR "$ENV{TACC_NETCDF_LIB}" CACHE PATH "Path to NetCDF C library") | ||
set(NetCDF_INCLUDE_DIR "$ENV{TACC_NETCDF_INC}" CACHE PATH "Path to NetCDF include") | ||
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set(CMAKE_Fortran_FLAGS_RELEASE "-xCORE-AVX512 -O3 -no-prec-sqrt -no-prec-div -align all -assume buffered_io -assume byterecl" CACHE STRING "Fortran flags" FORCE) | ||
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#Hybrid (remember to add OMP in the name above) | ||
#set(CMAKE_Fortran_FLAGS_RELEASE "-xCORE-AVX512 -O3 -no-prec-sqrt -no-prec-div -align all -assume buffered_io -assume byterecl -qopenmp" CACHE STRING "Fortran flags" FORCE) |
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module load netcdf/4.9.2 | ||
###Use defaults for others |
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#!/bin/bash | ||
#---------------------------------------------------- | ||
# Sample Slurm job script | ||
# for TACC Stampede3 SPR nodes | ||
# | ||
# *** MPI Job in SPR Queue *** | ||
# | ||
# Last revised: 23 April 2024 | ||
# | ||
# Notes: | ||
# | ||
# -- Launch this script by executing | ||
# "sbatch spr.mpi.slurm" on Stampede3 login node. | ||
# | ||
# -- Use ibrun to launch MPI codes on TACC systems. | ||
# Do not use mpirun or mpiexec. | ||
# | ||
# -- Max recommended MPI ranks per SPR node: 112 | ||
# (start small, increase gradually). | ||
# | ||
# -- If you're running out of memory, try running | ||
# on more nodes using fewer tasks and/or threads | ||
# per node to give each task access to more memory. | ||
# | ||
# -- Don't worry about task layout. By default, ibrun | ||
# will provide proper affinity and pinning. | ||
# | ||
# -- You should always run out of $SCRATCH. Your input | ||
# files, output files, and exectuable should be | ||
# in the $SCRATCH directory hierarchy. | ||
# | ||
# From Dan, | ||
# SPR nodes has 112 cores, however, | ||
# try lower cores if you have allocation error in output log. | ||
# Especially for large domain case like STOFS-3D | ||
# STOFS-Atl use 85 cores per node | ||
#---------------------------------------------------- | ||
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#SBATCH -J STOFS-Atl # Job name | ||
#SBATCH -o Atl.o%j # Name of stdout output file | ||
#SBATCH -e Atl.e%j # Name of stderr error file | ||
#SBATCH -p spr # Queue (partition) name | ||
#SBATCH -N 32 # Total # of nodes | ||
#SBATCH -n 2720 # Total # of mpi tasks (85 cores/nd *32 node) | ||
#SBATCH -t 01:00:00 # Run time (hh:mm:ss) | ||
#SBATCH [email protected] | ||
#SBATCH --mail-type=all # Send email at begin and end of job | ||
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# Other commands must follow all #SBATCH directives... | ||
module load netcdf/4.9.2 | ||
module list | ||
pwd | ||
date | ||
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# Always run your jobs out of $SCRATCH. Your input files, output files, | ||
# and exectuable should be in the $SCRATCH directory hierarchy. | ||
# Change directories to your $SCRATCH directory where your executable is | ||
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#cd $SCRATCH | ||
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# Launch MPI code... | ||
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ibrun ./pschism_STAM3_NO_PARMETIS_PREC_EVAP_BLD_STANDALONE_TVD-VL 6 # Use ibrun instead of mpirun or mpiexec | ||
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