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* Rename workflow, update actions * Update .readthedocs * Rename build and deploy script, update to modern actions * Add dependabot * Drop python 3.6 support * WIP: unpin the dependencies for now * Remove deprecated numpy code * Use tuples instead of lists in min_max scaler tests * Use scipy.sparse.random_array instead of deprecated scipy.sparse.random scipy.sparse.random produces a random matrix with a deprecated matrix constructor. This instead uses a np.array style constructor. * Update sparse tests * Drop python 3.7 support * Inlcude ipykernel in docs deps * Update GH action * Add files, modify scripts * Add regex for csv files in conf.py * Use pathlib * Make gallery columns larger * Attempt to fix gallery clipping * Make gallery wider * Replace uint8 with built-in int for colorscale * Update RELEASE.md
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| # Set update schedule for GitHub Actions | ||
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| version: 2 | ||
| updates: | ||
| - package-ecosystem: "github-actions" | ||
| directory: "/" | ||
| schedule: | ||
| # Check for updates to GitHub Actions every week | ||
| interval: "weekly" |
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| # This workflows will upload a Python Package using Twine when a release is created | ||
| # For more information see: https://help.github.com/en/actions/language-and-framework-guides/using-python-with-github-actions#publishing-to-package-registries | ||
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| name: Build and Upload Python Package | ||
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| on: | ||
| workflow_dispatch: | ||
| pull_request: | ||
| push: | ||
| branches: | ||
| - main | ||
| release: | ||
| types: | ||
| - published | ||
|
|
||
| jobs: | ||
| build_wheel_and_sdist: | ||
| runs-on: ubuntu-latest | ||
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| steps: | ||
| - uses: actions/checkout@v4 | ||
| with: | ||
| fetch-depth: 0 | ||
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| - name: Build SDist and wheel | ||
| run: pipx run build | ||
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| - uses: actions/upload-artifact@v4 | ||
| with: | ||
| name: Packages | ||
| path: dist/* | ||
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| - name: Check metadata | ||
| run: pipx run twine check dist/* | ||
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| upload_pypi: | ||
| name: Upload release to PyPI | ||
| needs: [build_wheel_and_sdist] | ||
| runs-on: ubuntu-latest | ||
| environment: | ||
| name: pypi | ||
| url: https://pypi.org/p/kmapper | ||
| permissions: | ||
| id-token: write | ||
| if: github.event_name == 'release' && github.event.action == 'published' | ||
| steps: | ||
| - uses: actions/download-artifact@v4 | ||
| with: | ||
| name: Packages | ||
| path: dist | ||
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| - uses: pypa/gh-action-pypi-publish@release/v1 |
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| # This workflow will install Python dependencies, run tests and lint with a single version of Python | ||
| # For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions | ||
|
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| name: Python application | ||
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| on: | ||
| push: | ||
| branches: [master] | ||
| pull_request: | ||
| branches: [master] | ||
|
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| jobs: | ||
| test: | ||
| runs-on: ubuntu-latest | ||
| strategy: | ||
| matrix: | ||
| python-version: ["3.8", "3.9", "3.10", "3.11", "3.12"] | ||
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| steps: | ||
| - uses: actions/checkout@v4 | ||
| - name: Set up Python ${{ matrix.python-version }} | ||
| uses: actions/setup-python@v5 | ||
| with: | ||
| python-version: ${{ matrix.python-version }} | ||
| - name: Install dependencies | ||
| run: | | ||
| python -m pip install --upgrade pip | ||
| pip install flake8 pytest-cov | ||
| pip install -e ".[testing]" | ||
| - name: Lint with flake8 | ||
| run: | | ||
| # stop the build if there are Python syntax errors or undefined names | ||
| flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics | ||
| # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide | ||
| flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics | ||
| - name: Test with pytest | ||
| run: | | ||
| pytest --cov kmapper | ||
| - name: Upload coverage results | ||
| run: | | ||
| bash <(curl -s https://codecov.io/bash) |
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| version: 2 | ||
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| build: | ||
| os: "ubuntu-22.04" | ||
| tools: | ||
| python: "3.11" | ||
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| python: | ||
| version: 3.7 | ||
| install: | ||
| - method: pip | ||
| path: . | ||
| extra_requirements: | ||
| - docs | ||
| install: | ||
| - method: pip | ||
| path: . | ||
| extra_requirements: | ||
| - docs |
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| .sphx-glr-thumbcontainer { | ||
| min-height: 280px !important; | ||
| margin: 20px !important; | ||
| min-height: 320px !important; | ||
| margin: 20px !important; | ||
| } | ||
| .sphx-glr-thumbcontainer .figure { | ||
| width: 280px !important; | ||
| width: 320px !important; | ||
| } | ||
| .sphx-glr-thumbcontainer img { | ||
| max-height: 280px !important; | ||
| width: 280px !important; | ||
| max-width: 280px; | ||
| max-height: 250px !important; | ||
| width: 250px !important; | ||
| max-width: 320px; | ||
| } | ||
| .sphx-glr-thumbcontainer a.internal { | ||
| padding: 220px 10px 0 !important; | ||
| padding: 220px 10px 0 !important; | ||
| } | ||
| .sphx-glr-thumbnails { | ||
| grid-template-columns: repeat(auto-fill, minmax(320px, 1fr)); | ||
| } |
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