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serenalotreck/README.md

Hi there! I'm Serena.

Serena at Pictured Rocks in the Upper Peninsula of Michigan

I'm a computational plant biologist with a background in biochemistry, pursuing my PhD at Michigan State University (MSU) co-advised by Drs. Bob VanBuren and Mohammad Ghassemi. I work on applying natural language processing techniques to answer biological questions in the plant science domain. For more details on active projects, feel free to browse my repositories or view my website.

I care about writing reproducible, well-documented code for biology, and am always looking for feedback on my code and documentation. If you're using code from one of my repositories and have any questions or feedback, please open an issue or email me at [email protected]!

I love science communication, and have written a guest blog for MSU SciComm and have been interviewed for their podcast. I also enjoy giving talks on topics like applications of machine learning in plant biology and my own research.

I'm also a founding member and past president of QT-Grad, an organization for queer and trans graduate students at MSU, and helped found & run the peer mentorship program in my home department.

Fun fact: In my undergrad, I was a rock climbing instructor at the Lindseth Climbing Center, where I taught people how to top rope and lead climb!

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  1. pickle-corpus-code pickle-corpus-code Public

    Code for the manuscript "In a PICKLE: Entity and relation annotation guidelines for the molecular plant sciences"

    Jupyter Notebook 2

  2. desiccation-network desiccation-network Public

    Code for the project Drying to Connect: A bibliometric analysis of desiccation tolerance research across the kingdoms of life.

    Jupyter Notebook

  3. literature-genes literature-genes Public

    Code to identify gene candidates involved in desiccation tolerance from the literature

    Jupyter Notebook

  4. forum-lesson-plan forum-lesson-plan Public

    Lesson 6 for Foundations in Computational Plant Science (NRT-IMPACTS)

    Jupyter Notebook 1

  5. multi-omics multi-omics Public

    Code for multi-omic deep learning integration project

    Python 2

  6. tutorials tutorials Public

    Collection of tutorials I've made or adapted

    Jupyter Notebook