Skip to content

Alleles and linkage information to estimate range of compatible haplotypes

License

Notifications You must be signed in to change notification settings

sergpolly/HaploLimit

Folders and files

NameName
Last commit message
Last commit date

Latest commit

 

History

13 Commits
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 

Repository files navigation

HaploLimit

Alleles and linkage information to estimate range of compatible haplotypes

This is the minimal working example with the initial example from Nick sent in 2015. ./bin/testhaplo simply gives bounds for all compatible haplotypes, and is being launched many times by the haploscanner.py master script.

Master script calculates haplo-boundaries for the original input data and then moves on the scanning procedure: fix haplotype frequency within the determined complatible range and recaluclate other boundaries accordingly.

About

Alleles and linkage information to estimate range of compatible haplotypes

Resources

License

Stars

Watchers

Forks

Packages

No packages published