Add variant_length field #62
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| name: CD | |
| on: | |
| push: | |
| branches: | |
| - main | |
| tags: | |
| - '*' | |
| release: | |
| types: [published] | |
| jobs: | |
| packaging: | |
| if: github.repository_owner == 'sgkit-dev' | |
| name: Packaging | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: actions/setup-python@v5 | |
| with: | |
| python-version: '3.9' | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| python -m pip install build twine validate-pyproject[all] | |
| - name: Check and install package | |
| run: | | |
| validate-pyproject pyproject.toml | |
| python -m build | |
| python -m twine check --strict dist/* | |
| python -m pip install dist/*.whl | |
| - name: Check vcf2zarr CLI | |
| run: | | |
| vcf2zarr --help | |
| python -m bio2zarr vcf2zarr --help | |
| - name: Check vcfpartition CLI | |
| run: | | |
| vcfpartition --help | |
| python -m bio2zarr vcfpartition --help | |
| - name: Store the distribution packages | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: python-package-distributions | |
| path: dist/ | |
| publish-to-pypi: | |
| if: github.repository_owner == 'sgkit-dev' && github.event_name == 'release' | |
| needs: | |
| - packaging | |
| runs-on: ubuntu-latest | |
| environment: | |
| name: pypi | |
| url: https://pypi.org/p/bio2zarr | |
| permissions: | |
| id-token: write # IMPORTANT: mandatory for trusted publishing | |
| steps: | |
| - uses: actions/download-artifact@v4 | |
| with: | |
| name: python-package-distributions | |
| path: dist/ | |
| - uses: pypa/gh-action-pypi-publish@release/v1 | |
| publish-to-testpypi: | |
| if: github.repository_owner == 'sgkit-dev' && github.event_name == 'push' && startsWith(github.event.ref, 'refs/tags') | |
| needs: | |
| - packaging | |
| runs-on: ubuntu-latest | |
| environment: | |
| name: testpypi | |
| url: https://test.pypi.org/p/bio2zarr | |
| permissions: | |
| id-token: write # IMPORTANT: mandatory for trusted publishing | |
| steps: | |
| - uses: actions/download-artifact@v4 | |
| with: | |
| name: python-package-distributions | |
| path: dist/ | |
| - uses: pypa/gh-action-pypi-publish@release/v1 | |
| with: | |
| repository-url: https://test.pypi.org/legacy/ |