Change local alleles default to false #265

	name: Docs

	on:
	pull_request:
	push:
	branches:
	- main
	tags:
	- '*'

	jobs:
	build-docs:
	name: Build
	runs-on: ubuntu-latest
	steps:
	- name: Cancel Previous Runs
	uses: styfle/[email protected]
	with:
	access_token: ${{ github.token }}

	- uses: actions/checkout@v3

	- uses: actions/setup-python@v4
	with:
	python-version: "3.11"
	cache: 'pip'

	- name: Create venv and install deps
	run: \|
	pip install --upgrade pip wheel
	pip install -r docs/requirements.txt
	python3 -m bash_kernel.install

	- name: Install bcftools
	run: \|
	sudo apt-get install bcftools jq

	- name: Install package
	run: \|
	python3 -m pip install .

	- name: Build Docs
	run: \|
	make -C docs

	- name: Upload Pages Artifact
	uses: actions/upload-pages-artifact@v3
	with:
	path: docs/_build/html

	deploy:
	needs: build-docs
	if: github.event_name != 'pull_request'
	permissions:
	pages: write
	id-token: write

	environment:
	name: github-pages
	url: ${{ steps.deployment.outputs.page_url }}

	runs-on: ubuntu-latest
	steps:
	- name: Deploy to GitHub Pages
	id: deployment
	uses: actions/deploy-pages@v4

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