chore: Update Badger version to v4 (sourcenetwork#1740)

## Relevant issue(s)

Resolves sourcenetwork#1702

## Description

This PR updates the Badger version to v4.

It includes a temporary fix to our badger `os.Exit` issue that is
costing us time when managing PRs. This should be reverted or properly
fixed before releasing v0.7.

api/http/handler_test.go

@@ -20,11 +20,11 @@ import (
 	"path"
 	"testing"
 
-	badger "github.com/dgraph-io/badger/v3"
+	badger "github.com/dgraph-io/badger/v4"
 	"github.com/pkg/errors"
 	"github.com/stretchr/testify/assert"
 
-	badgerds "github.com/sourcenetwork/defradb/datastore/badger/v3"
+	badgerds "github.com/sourcenetwork/defradb/datastore/badger/v4"
 	"github.com/sourcenetwork/defradb/db"
 	"github.com/sourcenetwork/defradb/logging"
 )

api/http/handlerfuncs_test.go

@@ -22,15 +22,15 @@ import (
 	"testing"
 	"time"
 
-	badger "github.com/dgraph-io/badger/v3"
+	badger "github.com/dgraph-io/badger/v4"
 	dshelp "github.com/ipfs/boxo/datastore/dshelp"
 	"github.com/ipfs/go-cid"
 	"github.com/stretchr/testify/assert"
 	"github.com/stretchr/testify/mock"
 	"github.com/stretchr/testify/require"
 
 	"github.com/sourcenetwork/defradb/client"
-	badgerds "github.com/sourcenetwork/defradb/datastore/badger/v3"
+	badgerds "github.com/sourcenetwork/defradb/datastore/badger/v4"
 	"github.com/sourcenetwork/defradb/db"
 	"github.com/sourcenetwork/defradb/errors"
 )

cli/serverdump.go

@@ -19,7 +19,7 @@ import (
 
 	"github.com/sourcenetwork/defradb/config"
 	ds "github.com/sourcenetwork/defradb/datastore"
-	badgerds "github.com/sourcenetwork/defradb/datastore/badger/v3"
+	badgerds "github.com/sourcenetwork/defradb/datastore/badger/v4"
 	"github.com/sourcenetwork/defradb/db"
 	"github.com/sourcenetwork/defradb/errors"
 	"github.com/sourcenetwork/defradb/logging"

cli/start.go

@@ -20,7 +20,7 @@ import (
 	"strings"
 	"syscall"
 
-	badger "github.com/dgraph-io/badger/v3"
+	badger "github.com/dgraph-io/badger/v4"
 	grpc_middleware "github.com/grpc-ecosystem/go-grpc-middleware"
 	grpc_recovery "github.com/grpc-ecosystem/go-grpc-middleware/recovery"
 	ma "github.com/multiformats/go-multiaddr"
@@ -32,7 +32,7 @@ import (
 	"github.com/sourcenetwork/defradb/client"
 	"github.com/sourcenetwork/defradb/config"
 	ds "github.com/sourcenetwork/defradb/datastore"
-	badgerds "github.com/sourcenetwork/defradb/datastore/badger/v3"
+	badgerds "github.com/sourcenetwork/defradb/datastore/badger/v4"
 	"github.com/sourcenetwork/defradb/db"
 	"github.com/sourcenetwork/defradb/errors"
 	"github.com/sourcenetwork/defradb/logging"

config/config.go

@@ -59,7 +59,7 @@ import (
 	"github.com/spf13/viper"
 	"golang.org/x/net/idna"
 
-	badgerds "github.com/sourcenetwork/defradb/datastore/badger/v3"
+	badgerds "github.com/sourcenetwork/defradb/datastore/badger/v4"
 	"github.com/sourcenetwork/defradb/logging"
 )
 

datastore/badger/v3/datastore.go → datastore/badger/v4/datastore.go

@@ -11,7 +11,7 @@ import (
 	"sync"
 	"time"
 
-	badger "github.com/dgraph-io/badger/v3"
+	badger "github.com/dgraph-io/badger/v4"
 	ds "github.com/ipfs/go-datastore"
 	dsq "github.com/ipfs/go-datastore/query"
 	logger "github.com/ipfs/go-log/v2"

datastore/badger/v3/datastore_test.go → datastore/badger/v4/datastore_test.go

@@ -15,7 +15,7 @@ import (
 	"testing"
 	"time"
 
-	"github.com/dgraph-io/badger/v3"
+	"github.com/dgraph-io/badger/v4"
 	ds "github.com/ipfs/go-datastore"
 	dsq "github.com/ipfs/go-datastore/query"
 	"github.com/stretchr/testify/assert"

datastore/badger/v3/iterator.go → datastore/badger/v4/iterator.go

@@ -17,7 +17,7 @@ import (
 	"context"
 	"sync"
 
-	badger "github.com/dgraph-io/badger/v3"
+	badger "github.com/dgraph-io/badger/v4"
 	ds "github.com/ipfs/go-datastore"
 	dsq "github.com/ipfs/go-datastore/query"
 	goprocess "github.com/jbenet/goprocess"

datastore/concurrent_txt_test.go

@@ -14,11 +14,11 @@ import (
 	"context"
 	"testing"
 
-	badger "github.com/dgraph-io/badger/v3"
+	badger "github.com/dgraph-io/badger/v4"
 	ds "github.com/ipfs/go-datastore"
 	"github.com/stretchr/testify/require"
 
-	badgerds "github.com/sourcenetwork/defradb/datastore/badger/v3"
+	badgerds "github.com/sourcenetwork/defradb/datastore/badger/v4"
 	"github.com/sourcenetwork/defradb/datastore/memory"
 )
 

datastore/txn_test.go

@@ -14,11 +14,11 @@ import (
 	"context"
 	"testing"
 
-	badger "github.com/dgraph-io/badger/v3"
+	badger "github.com/dgraph-io/badger/v4"
 	ds "github.com/ipfs/go-datastore"
 	"github.com/stretchr/testify/require"
 
-	badgerds "github.com/sourcenetwork/defradb/datastore/badger/v3"
+	badgerds "github.com/sourcenetwork/defradb/datastore/badger/v4"
 )
 
 func TestNewTxnFrom(t *testing.T) {

datastore/wrappedstore_test.go

@@ -14,12 +14,12 @@ import (
 	"context"
 	"testing"
 
-	badger "github.com/dgraph-io/badger/v3"
+	badger "github.com/dgraph-io/badger/v4"
 	ds "github.com/ipfs/go-datastore"
 	"github.com/ipfs/go-datastore/query"
 	"github.com/stretchr/testify/require"
 
-	badgerds "github.com/sourcenetwork/defradb/datastore/badger/v3"
+	badgerds "github.com/sourcenetwork/defradb/datastore/badger/v4"
 	"github.com/sourcenetwork/defradb/datastore/memory"
 )
 

db/db_test.go

@@ -14,14 +14,14 @@ import (
 	"context"
 	"testing"
 
-	badger "github.com/dgraph-io/badger/v3"
+	badger "github.com/dgraph-io/badger/v4"
 	dag "github.com/ipfs/boxo/ipld/merkledag"
 	"github.com/stretchr/testify/assert"
 
 	"github.com/sourcenetwork/defradb/client"
 	"github.com/sourcenetwork/defradb/core"
 	corecrdt "github.com/sourcenetwork/defradb/core/crdt"
-	badgerds "github.com/sourcenetwork/defradb/datastore/badger/v3"
+	badgerds "github.com/sourcenetwork/defradb/datastore/badger/v4"
 	"github.com/sourcenetwork/defradb/merkle/clock"
 )
 

go.mod

@@ -5,7 +5,7 @@ go 1.20
 require (
 	github.com/bits-and-blooms/bitset v1.8.0
 	github.com/bxcodec/faker v2.0.1+incompatible
-	github.com/dgraph-io/badger/v3 v3.2103.5
+	github.com/dgraph-io/badger/v4 v4.1.0
 	github.com/evanphx/json-patch/v5 v5.6.0
 	github.com/fxamacker/cbor/v2 v2.4.0
 	github.com/go-chi/chi/v5 v5.0.10
@@ -56,7 +56,6 @@ require (
 require (
 	github.com/benbjohnson/clock v1.3.5 // indirect
 	github.com/beorn7/perks v1.0.1 // indirect
-	github.com/cespare/xxhash v1.1.0 // indirect
 	github.com/cespare/xxhash/v2 v2.2.0 // indirect
 	github.com/containerd/cgroups v1.1.0 // indirect
 	github.com/coreos/go-systemd/v22 v22.5.0 // indirect
@@ -202,6 +201,7 @@ require (
 
 // SourceNetwork fork og graphql-go
 replace (
+	github.com/dgraph-io/badger/v4 => github.com/sourcenetwork/badger/v4 v4.0.0-20230801145501-d3a57bd4c2ec
 	github.com/graphql-go/graphql => github.com/sourcenetwork/graphql-go v0.7.10-0.20230511091704-fe7085512c23
 	github.com/textileio/go-libp2p-pubsub-rpc => github.com/sourcenetwork/go-libp2p-pubsub-rpc v0.0.0-20230209220544-e16d5e34c4fc
 )

go.sum

@@ -48,9 +48,9 @@ github.com/AndreasBriese/bbloom v0.0.0-20190306092124-e2d15f34fcf9/go.mod h1:bOv
 github.com/AndreasBriese/bbloom v0.0.0-20190825152654-46b345b51c96 h1:cTp8I5+VIoKjsnZuH8vjyaysT/ses3EvZeaV/1UkF2M=
 github.com/BurntSushi/toml v0.3.1/go.mod h1:xHWCNGjB5oqiDr8zfno3MHue2Ht5sIBksp03qcyfWMU=
 github.com/BurntSushi/xgb v0.0.0-20160522181843-27f122750802/go.mod h1:IVnqGOEym/WlBOVXweHU+Q+/VP0lqqI8lqeDx9IjBqo=
+github.com/DataDog/zstd v1.4.1 h1:3oxKN3wbHibqx897utPC2LTQU4J+IHWWJO+glkAkpFM=
 github.com/Knetic/govaluate v3.0.1-0.20171022003610-9aa49832a739+incompatible/go.mod h1:r7JcOSlj0wfOMncg0iLm8Leh48TZaKVeNIfJntJ2wa0=
 github.com/Kubuxu/go-os-helper v0.0.1/go.mod h1:N8B+I7vPCT80IcP58r50u4+gEEcsZETFUpAzWW2ep1Y=
-github.com/OneOfOne/xxhash v1.2.2 h1:KMrpdQIwFcEqXDklaen+P1axHaj9BSKzvpUUfnHldSE=
 github.com/OneOfOne/xxhash v1.2.2/go.mod h1:HSdplMjZKSmBqAxg5vPj2TmRDmfkzw+cTzAElWljhcU=
 github.com/Shopify/sarama v1.19.0/go.mod h1:FVkBWblsNy7DGZRfXLU0O9RCGt5g3g3yEuWXgklEdEo=
 github.com/Shopify/toxiproxy v2.1.4+incompatible/go.mod h1:OXgGpZ6Cli1/URJOF1DMxUHB2q5Ap20/P/eIdh4G0pI=
@@ -168,8 +168,7 @@ github.com/dgraph-io/badger v1.6.0-rc1/go.mod h1:zwt7syl517jmP8s94KqSxTlM6IMsdhY
 github.com/dgraph-io/badger v1.6.0/go.mod h1:zwt7syl517jmP8s94KqSxTlM6IMsdhYy6psNgSztDR4=
 github.com/dgraph-io/badger v1.6.1/go.mod h1:FRmFw3uxvcpa8zG3Rxs0th+hCLIuaQg8HlNV5bjgnuU=
 github.com/dgraph-io/badger v1.6.2 h1:mNw0qs90GVgGGWylh0umH5iag1j6n/PeJtNvL6KY/x8=
-github.com/dgraph-io/badger/v3 v3.2103.5 h1:ylPa6qzbjYRQMU6jokoj4wzcaweHylt//CH0AKt0akg=
-github.com/dgraph-io/badger/v3 v3.2103.5/go.mod h1:4MPiseMeDQ3FNCYwRbbcBOGJLf5jsE0PPFzRiKjtcdw=
+github.com/dgraph-io/badger/v3 v3.2011.1 h1:Hmyof0WMEF/QtutX5SQHzIMnJQxb/IrSzhjckV2SD6g=
 github.com/dgraph-io/ristretto v0.0.2/go.mod h1:KPxhHT9ZxKefz+PCeOGsrHpl1qZ7i70dGTu2u+Ahh6E=
 github.com/dgraph-io/ristretto v0.1.1 h1:6CWw5tJNgpegArSHpNHJKldNeq03FQCwYvfMVWajOK8=
 github.com/dgraph-io/ristretto v0.1.1/go.mod h1:S1GPSBCYCIhmVNfcth17y2zZtQT6wzkzgwUve0VDWWA=
@@ -299,12 +298,10 @@ github.com/golang/protobuf v1.5.0/go.mod h1:FsONVRAS9T7sI+LIUmWTfcYkHO4aIWwzhcaS
 github.com/golang/protobuf v1.5.3 h1:KhyjKVUg7Usr/dYsdSqoFveMYd5ko72D+zANwlG1mmg=
 github.com/golang/protobuf v1.5.3/go.mod h1:XVQd3VNwM+JqD3oG2Ue2ip4fOMUkwXdXDdiuN0vRsmY=
 github.com/golang/snappy v0.0.0-20180518054509-2e65f85255db/go.mod h1:/XxbfmMg8lxefKM7IXC3fBNl/7bRcc72aCRzEWrmP2Q=
-github.com/golang/snappy v0.0.3/go.mod h1:/XxbfmMg8lxefKM7IXC3fBNl/7bRcc72aCRzEWrmP2Q=
 github.com/golang/snappy v0.0.4 h1:yAGX7huGHXlcLOEtBnF4w7FQwA26wojNCwOYAEhLjQM=
 github.com/golang/snappy v0.0.4/go.mod h1:/XxbfmMg8lxefKM7IXC3fBNl/7bRcc72aCRzEWrmP2Q=
 github.com/google/btree v0.0.0-20180813153112-4030bb1f1f0c/go.mod h1:lNA+9X1NB3Zf8V7Ke586lFgjr2dZNuvo3lPJSGZ5JPQ=
 github.com/google/btree v1.0.0/go.mod h1:lNA+9X1NB3Zf8V7Ke586lFgjr2dZNuvo3lPJSGZ5JPQ=
-github.com/google/flatbuffers v1.12.1/go.mod h1:1AeVuKshWv4vARoZatz6mlQ0JxURH0Kv5+zNeJKJCa8=
 github.com/google/flatbuffers v2.0.6+incompatible h1:XHFReMv7nFFusa+CEokzWbzaYocKXI6C7hdU5Kgh9Lw=
 github.com/google/flatbuffers v2.0.6+incompatible/go.mod h1:1AeVuKshWv4vARoZatz6mlQ0JxURH0Kv5+zNeJKJCa8=
 github.com/google/go-cmp v0.2.0/go.mod h1:oXzfMopK8JAjlY9xF4vHSVASa0yLyX7SntLO5aqRK0M=
@@ -609,7 +606,6 @@ github.com/kisielk/errcheck v1.2.0/go.mod h1:/BMXB+zMLi60iA8Vv6Ksmxu/1UDYcXs4uQL
 github.com/kisielk/errcheck v1.5.0/go.mod h1:pFxgyoBC7bSaBwPgfKdkLd5X25qrDl4LWUI2bnpBCr8=
 github.com/kisielk/gotool v1.0.0/go.mod h1:XhKaO+MFFWcvkIS/tQcRk01m1F5IRFswLeQ+oQHNcck=
 github.com/kkdai/bstream v0.0.0-20161212061736-f391b8402d23/go.mod h1:J+Gs4SYgM6CZQHDETBtE9HaSEkGmuNXF86RwHhHUvq4=
-github.com/klauspost/compress v1.12.3/go.mod h1:8dP1Hq4DHOhN9w426knH3Rhby4rFm6D8eO+e+Dq5Gzg=
 github.com/klauspost/compress v1.16.5 h1:IFV2oUNUzZaz+XyusxpLzpzS8Pt5rh0Z16For/djlyI=
 github.com/klauspost/compress v1.16.5/go.mod h1:ntbaceVETuRiXiv4DpjP66DpAtAGkEQskQzEyD//IeE=
 github.com/klauspost/cpuid/v2 v2.0.4/go.mod h1:FInQzS24/EEf25PyTYn52gqo7WaD8xa0213Md/qVLRg=
@@ -1193,6 +1189,8 @@ github.com/soheilhy/cmux v0.1.4/go.mod h1:IM3LyeVVIOuxMH7sFAkER9+bJ4dT7Ms6E4xg4k
 github.com/sony/gobreaker v0.4.1/go.mod h1:ZKptC7FHNvhBz7dN2LGjPVBz2sZJmc0/PkyDJOjmxWY=
 github.com/sourcegraph/annotate v0.0.0-20160123013949-f4cad6c6324d/go.mod h1:UdhH50NIW0fCiwBSr0co2m7BnFLdv4fQTgdqdJTHFeE=
 github.com/sourcegraph/syntaxhighlight v0.0.0-20170531221838-bd320f5d308e/go.mod h1:HuIsMU8RRBOtsCgI77wP899iHVBQpCmg4ErYMZB+2IA=
+github.com/sourcenetwork/badger/v4 v4.0.0-20230801145501-d3a57bd4c2ec h1:br39/Te7XrQmirI+QtT6YblhD9T6B2dzDNI9eoI26Pg=
+github.com/sourcenetwork/badger/v4 v4.0.0-20230801145501-d3a57bd4c2ec/go.mod h1:qfCqhPoWDFJRx1gp5QwwyGo8xk1lbHUxvK9nK0OGAak=
 github.com/sourcenetwork/go-libp2p-pubsub-rpc v0.0.0-20230209220544-e16d5e34c4fc h1:ZrkklfmN27eENGFmzblEcs35PJ02hmlNgMHE8XJqFAo=
 github.com/sourcenetwork/go-libp2p-pubsub-rpc v0.0.0-20230209220544-e16d5e34c4fc/go.mod h1:3rOV6TxePSwADKpnwXBKpTjAA4QyjZBus13xc6VCtSw=
 github.com/sourcenetwork/graphql-go v0.7.10-0.20230511091704-fe7085512c23 h1:QcSWSYlE1alUC0uOO/trppYMLpR8OuFIL8IqR+PR5sA=

logging/logger.go

@@ -290,7 +290,7 @@ func (l *goLogger) ApplyConfig(config Config) {
 }
 
 // goLoggerV2 is a wrapper for a go-log V2 logger
-// Used by github.com/sourcenetwork/defradb/datastore/badger/v3
+// Used by github.com/sourcenetwork/defradb/datastore/badger/v4
 type goLoggerV2 struct {
 	*logger
 	*gologV2.ZapEventLogger

net/node_test.go

@@ -16,15 +16,15 @@ import (
 	"testing"
 	"time"
 
-	badger "github.com/dgraph-io/badger/v3"
+	badger "github.com/dgraph-io/badger/v4"
 	"github.com/libp2p/go-libp2p/core/event"
 	"github.com/libp2p/go-libp2p/core/peer"
 	ma "github.com/multiformats/go-multiaddr"
 	"github.com/stretchr/testify/require"
 
 	"github.com/sourcenetwork/defradb/client"
 	"github.com/sourcenetwork/defradb/config"
-	badgerds "github.com/sourcenetwork/defradb/datastore/badger/v3"
+	badgerds "github.com/sourcenetwork/defradb/datastore/badger/v4"
 	"github.com/sourcenetwork/defradb/datastore/memory"
 	"github.com/sourcenetwork/defradb/db"
 	"github.com/sourcenetwork/defradb/logging"

net/server.go

@@ -29,7 +29,7 @@ import (
 
 	"github.com/sourcenetwork/defradb/client"
 	"github.com/sourcenetwork/defradb/core"
-	"github.com/sourcenetwork/defradb/datastore/badger/v3"
+	"github.com/sourcenetwork/defradb/datastore/badger/v4"
 	"github.com/sourcenetwork/defradb/errors"
 	"github.com/sourcenetwork/defradb/logging"
 	pb "github.com/sourcenetwork/defradb/net/pb"

tests/bench/bench_util.go

@@ -18,7 +18,7 @@ import (
 	"sync"
 	"testing"
 
-	"github.com/dgraph-io/badger/v3"
+	"github.com/dgraph-io/badger/v4"
 	ds "github.com/ipfs/go-datastore"
 
 	"github.com/sourcenetwork/defradb/client"

tests/integration/utils2.go

@@ -20,14 +20,14 @@ import (
 	"testing"
 	"time"
 
-	badger "github.com/dgraph-io/badger/v3"
+	badger "github.com/dgraph-io/badger/v4"
 	"github.com/sourcenetwork/immutable"
 	"github.com/stretchr/testify/assert"
 	"github.com/stretchr/testify/require"
 
 	"github.com/sourcenetwork/defradb/client"
 	"github.com/sourcenetwork/defradb/datastore"
-	badgerds "github.com/sourcenetwork/defradb/datastore/badger/v3"
+	badgerds "github.com/sourcenetwork/defradb/datastore/badger/v4"
 	"github.com/sourcenetwork/defradb/datastore/memory"
 	"github.com/sourcenetwork/defradb/db"
 	"github.com/sourcenetwork/defradb/errors"

tools/configs/golangci.yaml

@@ -149,7 +149,7 @@ issues:
         - errorlint
 
     # Exclude running header check in these paths
-    - path: "(net|datastore/badger/v3/compat_logger.go|datastore/badger/v3/datastore.go|connor)"
+    - path: "(net|datastore/badger/v4/compat_logger.go|datastore/badger/v4/datastore.go|connor)"
       linters:
         - goheader