Added meson build system files

.github/workflows/build.yml

@@ -9,7 +9,7 @@ jobs:
 
     strategy:
       matrix:
-        python: ["3.11", "3.10", "3.9", "3.8"]
+        python: ["3.12", "3.11", "3.10", "3.9"]
 
     steps:
       - uses: actions/checkout@v1
@@ -19,11 +19,9 @@ jobs:
 
       - name: Run Tests (Linux)
         run: |
-          python -m pip install --upgrade pip setuptools wheel
-          python -m pip install pytest-cov numpy "Cython<3.0.4"
-          python setup.py build_ext -i
-          python -m pip install .
-          pytest --cov-report html --cov-report xml --cov-report annotate --cov=pixell pixell/tests/ -s
+          python -m pip install --upgrade pip setuptools wheel meson ninja meson-python cython numpy
+          python -m pip install --no-build-isolation --editable '.[test]'
+          pytest --cov --cov-report html --cov-report xml --cov-report annotate -s
 
       - uses: codecov/codecov-action@v2
         with:
@@ -44,7 +42,7 @@ jobs:
       - uses: actions/checkout@v1
       - uses: actions/setup-python@v1
         with:
-          python-version: "3.9"
+          python-version: "3.10"
 
       - name: Install Dependencies (MacOS)
         run: |
@@ -58,141 +56,58 @@ jobs:
         run: |
           ln -s $FC $(dirname $(which $FC))/gfortran
           echo "Using FC=$FC CXX=$CXX CC=$CC"
-          python setup.py build_ext -i 
           python -m pip install .
 
       - name: Run Tests (MacOS)
         run: |
-          pytest pixell/tests/ -s
-
+          pytest -s
 
-  build_wheels_linux:
-    name: Build wheels on Linux
-    runs-on: ubuntu-latest
+  build_wheels:
+    name: Build wheels on ${{ matrix.os }}
+    runs-on: ${{ matrix.os }}
     strategy:
-      # Ensure that a wheel builder finishes even if another fails
-      fail-fast: false
       matrix:
-        os: [ubuntu-20.04]
-        cp: [cp38, cp39, cp310, cp311]
-        include:
-          - cp: cp38
-            numpyver: "1.20"
-          - cp: cp39
-            numpyver: "1.20"
-          - cp: cp310
-            numpyver: "1.22"
-          - cp: cp311
-            numpyver: "1.22"
+        # macos-13 is an intel runner, macos-14 is apple silicon
+        os: [ubuntu-latest, macos-13]
 
     steps:
-      - uses: actions/checkout@v2
+      - uses: actions/checkout@v4
 
-      - uses: actions/setup-python@v2
-        name: Install Python
-        with:
-          python-version: '3.8'
-
-      - name: Install cibuildwheel and other dependencies
-        run: |
-          python -m pip install -U pip
-          python -m pip install -U setuptools
-          python -m pip install --upgrade pip setuptools wheel
-          python -m pip install pytest-cov numpy "Cython<3.0.4"
-          python -m pip install cibuildwheel
-
-      - name: Test and build wheels
-        run: |
-          ln -s $FC $(dirname $(which $FC))/gfortran
-          bash scripts/build_wheels.sh
+      - name: Build wheels
+        uses: pypa/[email protected]
         env:
-          CIBW_ENVIRONMENT: OMP_NUM_THREADS=2
-                            OPENBLAS_NUM_THREADS=2
-          CIBW_BEFORE_BUILD: "python -m pip install numpy==${{ matrix.numpyver }} scipy 'cython<3.0.4'"
-          CIBW_BUILD_VERBOSITY: 3
-          # If users are still on 32 bit systems or PPC they should build from source.
-          CIBW_BUILD: "${{ matrix.cp }}-manylinux_{x86_64,aarch64}"
-          CIBW_TEST_REQUIRES: pytest
-          CIBW_TEST_COMMAND: >
-            cd /
-            pytest {project}/pixell/tests -s
-          PYTHON: "python"
-          PIP: "pip"
+          FC: gfortran-12
+          CC: gcc-12
+          MACOSX_DEPLOYMENT_TARGET: "13.0"
 
-      - uses: actions/upload-artifact@v2
+      - uses: actions/upload-artifact@v4
         with:
+          name: cibw-wheels-${{ matrix.os }}-${{ strategy.job-index }}
           path: ./wheelhouse/*.whl
 
-  build_wheels_macos:
-    name: Build wheels on MacOS
-    runs-on: macos-12
-    env:
-      CC: gcc-12
-      CXX: gcc-12
-      FC: gfortran-12
-      DUCC0_NUM_THREADS: 2
+  build_wheels_macos_arm:
+    name: Build wheels on ${{ matrix.os }}
+    runs-on: ${{ matrix.os }}
     strategy:
-      # Ensure that a wheel builder finishes even if another fails
-      fail-fast: false
       matrix:
-        os: [macos-12]
-        # We don't build 3.7 wheels for MacOS because that's x86 only.
-        cp: [cp38, cp39, cp310, cp311]
-        include:
-          - cp: cp38
-            numpyver: "1.20"
-          - cp: cp39
-            numpyver: "1.20"
-          - cp: cp310
-            numpyver: "1.22"
-          - cp: cp311
-            numpyver: "1.22"
+        # macos-13 is an intel runner, macos-14 is apple silicon
+        os: [macos-14]
 
     steps:
-      - uses: actions/checkout@v2
+      - uses: actions/checkout@v4
 
-      - uses: actions/setup-python@v2
-        name: Install Python
-        with:
-          python-version: '3.9'
-
-      - name: Install cibuildwheel and other dependencies
-        run: |
-          python -m pip install -U pip
-          python -m pip install -U setuptools
-          python -m pip install --upgrade pip setuptools wheel
-          python -m pip install pytest-cov numpy "Cython<3.0.4"
-          python -m pip install cibuildwheel
-
-      - name: Test and build wheels
-        run: |
-          ln -s $FC $(dirname $(which $FC))/gfortran
-          bash scripts/build_wheels.sh
+      - name: Build wheels
+        uses: pypa/[email protected]
         env:
-          CIBW_ENVIRONMENT: OMP_NUM_THREADS=2
-                            OPENBLAS_NUM_THREADS=2
-          CIBW_BEFORE_BUILD: "python -m pip install numpy==${{ matrix.numpyver }} scipy 'cython<3.0.4'"
-          CIBW_BUILD_VERBOSITY: 3
-          # To build for both x86_64 and arm64, uncomment the following lines.
-          # That would require a fortran compiler that can cross-comile from
-          # x86_64 to arm64, as well as an OMP library that's cross-compiled.
-          # CIBW_BUILD: "${{ matrix.cp }}-macosx_{x86_64,arm64}"
-          CIBW_BUILD: "${{ matrix.cp }}-macosx_x86_64"
-          #CIBW_ARCHS_MACOS: "x86_64 arm64"
-          CIBW_ARCHS_MACOS: "x86_64"
-          CIBW_TEST_REQUIRES: pytest
-          CIBW_TEST_COMMAND: >
-            cd /
-            pytest {project}/pixell/tests -s
-          # Cannot test arm64 on non-native runner
-          CIBW_TEST_SKIP: "*_arm64"
-          PYTHON: "python"
-          PIP: "pip"
+          FC: gfortran-12
+          CC: gcc-12
+          MACOSX_DEPLOYMENT_TARGET: "14.0"
 
-      - uses: actions/upload-artifact@v2
+      - uses: actions/upload-artifact@v4
         with:
+          name: cibw-wheels-${{ matrix.os }}-${{ strategy.job-index }}
           path: ./wheelhouse/*.whl
-      
+
 
   build_sdist:
     name: Build source distribution
@@ -203,7 +118,7 @@ jobs:
       - uses: actions/setup-python@v2
         name: Install Python
         with:
-          python-version: '3.8'
+          python-version: '3.10'
 
       - name: Build sdist
         run: |
@@ -212,14 +127,15 @@ jobs:
           python -m pip install --upgrade pip setuptools wheel
           python -m pip install "Cython<3.0.4"
           python -m pip install numpy
-          python setup.py sdist
+          python -m pip install build
+          python -m build . --sdist
 
       - uses: actions/upload-artifact@v2
         with:
           path: dist/*.tar.gz
 
   upload_pypi:
-    needs: [build_wheels_linux, build_wheels_macos, build_sdist]
+    needs: [build_wheels, build_sdist, build_wheels_macos_arm]
     runs-on: ubuntu-latest
     # upload to PyPI on every tag starting with 'v'
     if: github.event_name == 'push' && startsWith(github.event.ref, 'refs/tags/v')

.readthedocs.yaml

@@ -7,7 +7,7 @@ version: 2
 build:
   os: ubuntu-22.04
   tools:
-    python: "3.7"
+    python: "3.9"
 
 # Build documentation in the docs/ directory with Sphinx
 sphinx:

Makefile

@@ -27,12 +27,10 @@ export PRINT_HELP_PYSCRIPT
 BROWSER := python -c "$$BROWSER_PYSCRIPT"
 
 python = python
--include options.mk
 
 # Main targets:
-
 develop:
-	OPT="" $(python) setup.py build_ext --inplace $(build_opts)
+	OPT="" $(python) -m pip install --no-build-isolation -e .
 
 help:
 	@$(python) -c "$$PRINT_HELP_PYSCRIPT" < $(MAKEFILE_LIST)
@@ -52,12 +50,10 @@ lint: ## check style with flake8
 	flake8 pixell tests
 
 test: ## run tests quickly with the default Python
-	$(python) setup.py test $(build_opts)
+	pytest
 
 coverage: ## check code coverage quickly with the default Python
-	coverage run --source pixell setup.py test
-	coverage report -m
-	coverage html
+	pytest --cov --cov-report=html
 	$(BROWSER) htmlcov/index.html
 
 docs: ## generate Sphinx HTML documentation, including API docs
@@ -75,9 +71,8 @@ release: dist ## package and upload a release
 	twine upload dist/*
 
 dist: clean ## builds source and wheel package
-	$(python) setup.py sdist $(build_opts)
-	$(python) setup.py bdist_wheel $(build_opts)
+	$(python) build
 	ls -l dist
 
 install: clean ## install the package to the active Python's site-packages
-	$(python) setup.py install $(build_opts)
+	pip install .