Make some Experiment/Query classes abstract #686
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| name: python-somacore | |
| on: | |
| pull_request: | |
| branches: ["*"] | |
| push: | |
| branches: [main] | |
| release: | |
| types: [published] | |
| jobs: | |
| format-check: | |
| runs-on: ubuntu-latest | |
| env: | |
| PYTHON_VERSION: "3.9" | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ env.PYTHON_VERSION }} | |
| cache: pip | |
| cache-dependency-path: "python-spec/requirements-py${{ env.PYTHON_VERSION }}*.txt" | |
| - name: Install static analysis packages | |
| working-directory: python-spec | |
| run: pip install -r requirements-py${PYTHON_VERSION}.txt -r requirements-py${PYTHON_VERSION}-lint.txt | |
| - name: Restore pre-commit cache | |
| uses: actions/cache@v3 | |
| with: | |
| path: ~/.cache/pre-commit | |
| key: pre-commit-${{ hashFiles('.pre-commit-config.yaml') }} | |
| - name: Run mypy | |
| run: mypy ./python-spec/src | |
| # We maintain this full mypy step since running mypy in pre-commit is | |
| # somewhat limited (cf. comments in .pre-commit-config.yaml). | |
| - name: Pre-commit check | |
| run: pre-commit run -a -v | |
| run-tests: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| python-version: ["3.9", "3.10", "3.11", "3.12"] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| # setuptools-scm needs a deep clone so it can look through history | |
| # to find a relevant tag. | |
| fetch-depth: 0 | |
| - uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| cache: pip | |
| cache-dependency-path: python-spec/requirements-py${{ matrix.python-version }}.txt | |
| - name: Install prereqs | |
| run: | | |
| pip install --upgrade pip wheel pytest pytest-cov setuptools | |
| pip install -r python-spec/requirements-py${{ matrix.python-version }}.txt | |
| pip install . | |
| - name: Run tests | |
| working-directory: ./python-spec | |
| run: | | |
| pytest -s -v --junitxml=junit/test-results.xml --cov somacore --cov-report=xml --cov-report=html | |
| upload-to-pypi: | |
| needs: | |
| - format-check | |
| - run-tests | |
| # Run only when tagging a release that starts with `python-`. | |
| if: > | |
| github.event_name == 'release' | |
| && github.event.action == 'published' | |
| && startsWith(github.event.release.tag_name, 'python-') | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: actions/setup-python@v5 | |
| with: | |
| cache: pip | |
| cache-dependency-path: python-spec/requirements-py3.10.txt | |
| python-version: "3.10" | |
| - name: Set up environment | |
| run: | | |
| pip install --upgrade build pip wheel setuptools setuptools-scm | |
| python -m build . | |
| - uses: pypa/gh-action-pypi-publish@release/v1 | |
| with: | |
| user: __token__ | |
| password: ${{ secrets.PYPI_API_TOKEN }} | |
| packages_dir: dist |