Package dependency pins & test #17

	name: python-tiledbsoma-ml CI

	on:
	pull_request:
	branches: ["*"]
	paths-ignore:
	- 'scripts/**'
	push:
	branches: [main]
	paths-ignore:
	- 'scripts/**'

	workflow_dispatch:

	jobs:
	lint:
	runs-on: ubuntu-latest
	steps:
	- uses: actions/checkout@v4

	- uses: actions/setup-python@v5
	with:
	python-version: "3.11"

	- name: Restore pre-commit cache
	uses: actions/cache@v4
	with:
	path: ~/.cache/pre-commit
	key: pre-commit-${{ hashFiles('.pre-commit-config.yaml') }}

	- name: Install pre-commit
	run: pip -v install pre-commit

	- name: Run pre-commit hooks on all files
	run: pre-commit run -v -a

	tests:
	runs-on: ubuntu-latest
	strategy:
	fail-fast: false
	matrix:
	python-version: ["3.9", "3.10", "3.11", "3.12"]
	steps:
	- uses: actions/checkout@v4

	- uses: actions/setup-python@v5
	with:
	python-version: ${{ matrix.python-version }}
	cache: pip

	- name: Install prereqs
	run: \|
	pip install --upgrade pip wheel pytest pytest-cov setuptools
	pip install .

	- name: Run tests
	run: pytest -v --cov=src --cov-report=xml tests

	build:
	# for now, just do a test build to ensure that it works
	runs-on: ubuntu-latest
	steps:
	- uses: actions/checkout@v4

	- uses: actions/setup-python@v5
	with:
	python-version: "3.11"

	- name: Do build
	run: \|
	pip install --upgrade build pip wheel setuptools setuptools-scm
	python -m build .

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