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Initial work toward PyTorch data loaders #1
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bkmartinjr
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bkmartinjr
requested review from
ryan-williams,
aaronwolen,
ebezzi,
atolopko-czi and
johnkerl
September 19, 2024 01:13
* add minimum version for several dependencies * add compat test for primary dependencies * fix typo in workflow * fix another typo * compat matrix refinement * fix quoting * refine compat test matrix * further simplify matrix * update changelog to use correct links (#3)
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Notes to reviewers:
tutorial_pytorch.ipynb
) has been updated to run with all API modifications.This PR contains a PyTorch iterable-style DataSet/DataPipe for use with SOMA Experiment. Initial code contributed by the Chan Zuckerberg single-cell team. Modifications to the original code include:
tiledbsoma_ml
shuffle=True
API change summary:
ExperimentAxisQuery
, rather than than anExperiment