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v1.9.5

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@skchronicles skchronicles released this 13 Aug 15:49

v1.9.5

What's Changed Across v1.9

  • v1.9.5:
    • Adding functionality to check and enforce that Snakemake and Singularity are in the user's $PATH.
    • Updating usage of download_dme_files to include a list of important env variables to export and fixing bug related to variable expansion
  • v1.9.4: Updating fastqc rules due to a potential gpfs filesystem issue to use local disk for the temp directory
  • v1.9.3: Sort bam files using samtools in single-end rules, avoids a ulimit issue with STAR, samtools is also faster/more efficient too
  • v1.9.2: Importing json module from standard library, no longer implicitly loaded by Snakemake in newer versions
  • v1.9.1: Updating helper script to run rMATS from an RNA-seek output directory

Full Changelog: v1.9.4...v1.9.5