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feat: ensembl reference collections #2977

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feat: ensembl reference collections #2977

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Commits on Jun 3, 2024

  1. added optional parameters to meta.yml

    @mauripops
    mauripops committed Jun 3, 2024
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  2. added collections optional parameter to ensembl-sequence, ensembl-ann… 

    …otation
    @mauripops
    mauripops committed Jun 3, 2024
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  3. updated Snakefiles with test cases for off branch references

    @mauripops
    mauripops committed Jun 3, 2024
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  4. linted and prep for testing

    @mauripops
    mauripops committed Jun 3, 2024
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Commits on Jun 11, 2024

  1. Update bio/reference/ensembl-annotation/test/Snakefile 

    Co-authored-by: Filipe G. Vieira <[email protected]>
    @mauripops @fgvieira
    mauripops and fgvieira authored Jun 11, 2024
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  2. Update bio/reference/ensembl-annotation/test/Snakefile 

    Co-authored-by: Filipe G. Vieira <[email protected]>
    @mauripops @fgvieira
    mauripops and fgvieira authored Jun 11, 2024
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  3. Update bio/reference/ensembl-sequence/test/Snakefile 

    Co-authored-by: Filipe G. Vieira <[email protected]>
    @mauripops @fgvieira
    mauripops and fgvieira authored Jun 11, 2024
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  4. Update bio/reference/ensembl-sequence/test/Snakefile 

    Co-authored-by: Filipe G. Vieira <[email protected]>
    @mauripops @fgvieira
    mauripops and fgvieira authored Jun 11, 2024
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  5. Update bio/reference/ensembl-sequence/test/Snakefile 

    Co-authored-by: Filipe G. Vieira <[email protected]>
    @mauripops @fgvieira
    mauripops and fgvieira authored Jun 11, 2024
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  6. Update bio/reference/ensembl-annotation/wrapper.py 

    Co-authored-by: Filipe G. Vieira <[email protected]>
    @mauripops @fgvieira
    mauripops and fgvieira authored Jun 11, 2024
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  7. Update bio/reference/ensembl-sequence/wrapper.py 

    Co-authored-by: Filipe G. Vieira <[email protected]>
    @mauripops @fgvieira
    mauripops and fgvieira authored Jun 11, 2024
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  8. Merge branch 'master' into ensembl-reference-collections

    @mauripops
    mauripops authored Jun 11, 2024
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Commits on Jun 12, 2024

  1. Update bio/reference/ensembl-sequence/wrapper.py 

    Co-authored-by: Filipe G. Vieira <[email protected]>
    @mauripops @fgvieira
    mauripops and fgvieira authored Jun 12, 2024
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