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feat: add toulligqc wrapper #3171

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Sep 24, 2024
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7 changes: 7 additions & 0 deletions bio/toulligqc/environment.yaml
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channels:
- conda-forge
- bioconda
- nodefaults
dependencies:
- toulligqc =2.5.6
- snakemake-wrapper-utils =0.6.2
12 changes: 12 additions & 0 deletions bio/toulligqc/meta.yaml
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name: "toulligqc"
description: "A post sequencing QC tool for Oxford Nanopore sequencers."
url: "https://github.com/GenomiqueENS/toulligQC"
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authors:
- "Ali Hamraoui"
- "Salomé Brunon"
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input:
- path to input data. Can be either a sequencing summary file, fastq file (uncompressed/ compressed) or bam file.
output:
- report and plots of QC results
params:
- extra: Optional parameters for `toulligqc`
11 changes: 11 additions & 0 deletions bio/toulligqc/test/Snakefile
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rule toulligqc:
input:
"demodata/sequencing_summary.txt",
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output:
"toulligqc_demo/report.html",
log:
"merged.log",
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params:
extra="", # optional additional parameters as string
wrapper:
"master/bio/toulligqc"
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