Releases: snakemake/snakemake-wrappers
Releases · snakemake/snakemake-wrappers
v3.8.0
Features
Bug Fixes
Performance Improvements
- autobump bio/busco (#2787) (ebe243e)
- autobump bio/deeptools/plotfingerprint (#2776) (214ea28)
- autobump bio/deeptools/plotheatmap (#2788) (81ee08b)
- autobump bio/ega/fetch (#2789) (fd83ecb)
- autobump bio/freebayes (#1850) (795e778)
- autobump bio/freebayes (#2790) (fe5de66)
- autobump bio/gdc-api/bam-slicing (#2778) (9375ca8)
- autobump bio/minimap2/aligner (#2780) (23fd5a3)
- autobump bio/minimap2/index (#2779) (8f5d611)
- autobump bio/plass (#2791) (11f34ca)
- autobump bio/rseqc/read_gc (#2781) (842998d)
- autobump bio/seqkit (#2795) (1b2e7ba)
- autobump bio/sourmash/compute (#2794) (8a37a3e)
- autobump bio/tabix/query (#2796) (e21217e)
- autobump bio/tmb/pytmb (#2797) (28ae8a8)
- autobump bio/ucsc/gtfToGenePred (#2782) (4e8c925)
- autobump bio/unicycler (#2316) (0d1486b)
- autobump bio/vembrane/filter (#2783) (bb271ab)
- autobump bio/vembrane/table (#2784) (491d5b6)
- autobump bio/vg/construct (#2798) (25300e4)
- autobump bio/vg/ids (#2804) (4162ce1)
- autobump bio/vg/kmers (#2802) (9ddb88d)
- autobump bio/vg/merge (#2800) (5ba8325)
- autobump bio/vg/prune (#2801) (2061beb)
- autobump bio/vg/sim (#2799) (dfb0d6b)
- autobump bio/vsearch (#2803) (7070607)
v3.7.0
v3.6.0
v3.5.3
Performance Improvements
- autobump bio/busco (#2760) (96a5ee7)
- autobump bio/cutadapt/pe (#2762) (7326a2b)
- autobump bio/cutadapt/se (#2761) (2df0403)
- autobump bio/mapdamage2 (#2765) (03e2812)
- autobump bio/mosdepth (#2764) (b8b54ee)
- autobump bio/rseqc/infer_experiment (#2767) (dfd6ce4)
- autobump bio/rseqc/read_distribution (#2766) (7f32bdf)
- autobump bio/salmon/index (#2769) (f27e290)
- autobump bio/salmon/quant (#2768) (74e93c2)
- autobump bio/sourmash/compute (#2770) (19a8a84)
- autobump utils/csvtk (#2763) (d3fc9d3)
- Update Datavzrd to 2.36.9 (#2758) (efb4337)
v3.5.2
v3.5.1
Performance Improvements
- autobump bio/deeptools/alignmentsieve (#2741) (ce63735)
- autobump bio/deeptools/computematrix (#2740) (c3416a0)
- autobump bio/deeptools/plotcoverage (#2742) (ec1b4e3)
- autobump bio/deeptools/plotprofile (#2743) (1773265)
- autobump bio/entrez/efetch (#2745) (43deba3)
- autobump bio/fgbio/setmateinformation (#2746) (6768125)
- autobump bio/gatk/genotypegvcfs (#2747) (37c7361)
- autobump bio/minimap2/aligner (#2748) (04eca33)
- autobump bio/minimap2/index (#2749) (60aac91)
- autobump bio/rseqc/read_duplication (#2750) (78f15d1)
- autobump bio/seqkit (#2751) (5a4705e)
- autobump bio/ucsc/genePredToBed (#2752) (72ea812)
v3.5.0
Features
- Genepred to bed (#2726) (3998574)
- MultiQC automatically detects configuration from input file(s) (#2722) (f61238d)
- Rseqc distribution (#2737) (c732ff0)
- Rseqc infer experiment (#2730) (c597f2b)
- Rseqc read duplication (#2731) (2d5f9e7)
- Rseqc read gc (#2729) (739d809)
- run Mutect2 multiple with input bam files (#2736) (7b42689)
Performance Improvements
v3.4.1
Performance Improvements
- autobump bio/gatk/applyvqsr (#2705) (8c90ec7)
- autobump bio/gatk/baserecalibrator (#2704) (0d6c664)
- autobump bio/gatk/collectalleliccounts (#2699) (9018e05)
- autobump bio/gatk/haplotypecaller (#2698) (aa76a60)
- autobump bio/gatk/intervallisttobed (#2700) (3d35d2b)
- autobump bio/gatk/printreadsspark (#2703) (a62781c)
- autobump bio/gatk/selectvariants (#2707) (9815aa5)
- autobump bio/gatk/variantstotable (#2697) (0e6c7ef)
- autobump bio/gatk3/baserecalibrator (#2702) (90a833a)
- autobump bio/gatk3/indelrealigner (#2701) (c13c656)
- autobump bio/gatk3/realignertargetcreator (#2706) (4f3e20b)
- autobump bio/multiqc (#2708) (4d60b0f)
- autobump bio/open-cravat/module (#2709) (c8ec2ae)
- autobump bio/open-cravat/run (#2710) (4268a26)
- autobump bio/picard/collectinsertsizemetrics (#2711) (a2b2d66)
- autobump bio/vg/construct (#2715) (7b1cde1)
- autobump bio/vg/ids (#2717) (e7b495b)
- autobump bio/vg/kmers (#2716) (e5d6785)
- autobump bio/vg/merge (#2713) (2609163)
- autobump bio/vg/prune (#2714) (3abe763)
- autobump bio/vg/sim (#2712) (79dfbef)
- Update datavzrd to 2.36.2 (#2694) (b1ea355)
- Update Datavzrd to 2.36.3 (#2696) (baa8376)
v3.4.0
v3.3.7
Bug Fixes
Performance Improvements
- autobump bio/bbtools (#2627) (7f5b520)
- autobump bio/diamond/blastp (#2630) (3911776)
- autobump bio/diamond/blastx (#2629) (faf5de8)
- autobump bio/diamond/makedb (#2628) (7ddca67)
- autobump bio/encode_fastq_downloader (#2682) (eb4a093)
- autobump bio/fgbio/collectduplexseqmetrics (#2631) (7a58ee9)
- autobump bio/galah (#2670) (8972be1)
- autobump bio/gatk/applybqsr (#2662) (2d1ff8e)
- autobump bio/gatk/applybqsrspark (#2669) (46a8acd)
- autobump bio/gatk/baserecalibratorspark (#2651) (3b4f517)
- autobump bio/gatk/calculatecontamination (#2673) (056c9a0)
- autobump bio/gatk/callcopyratiosegments (#2655) (b1932ae)
- autobump bio/gatk/cleansam (#2660) (3802099)
- autobump bio/gatk/collectreadcounts (#2666) (0aa2cce)
- autobump bio/gatk/combinegvcfs (#2686) (a903745)
- autobump bio/gatk/denoisereadcounts (#2685) (1e8498b)
- autobump bio/gatk/depthofcoverage (#2658) (1f43492)
- autobump bio/gatk/estimatelibrarycomplexity (#2650) (e9395ff)
- autobump bio/gatk/filtermutectcalls (#2684) (b239e62)
- autobump bio/gatk/genomicsdbimport (#2665) (a38b278)
- autobump bio/gatk/getpileupsummaries (#2657) (7523193)
- autobump bio/gatk/learnreadorientationmodel (#2653) (773e78c)
- autobump bio/gatk/leftalignandtrimvariants (#2656) (183950c)
- autobump bio/gatk/markduplicatesspark (#2659) (706cda3)
- autobump bio/gatk/modelsegments (#2663) (bc40698)
- autobump bio/gatk/mutect (#2661) (0e1d98a)
- autobump bio/gatk/scatterintervalsbyns (#2674) (e49b027)
- autobump bio/gatk/splitintervals (#2667) (332eed5)
- autobump bio/gatk/splitncigarreads (#2672) (dabbc1e)
- autobump bio/gatk/variantannotator (#2664) (2142589)
- autobump bio/gatk/varianteval (#2654) (9d4ffea)
- autobump bio/gatk/variantfiltration (#2668) (5cf5407)
- autobump bio/gatk/variantrecalibrator (#2652) (714ae91)
- autobump bio/gatk3/printreads (#2683) (c15b388)
- autobump bio/gatk3/realignertargetcreator (#2671) (103425a)
- autobump bio/igv-reports (#2641) (4bac92e)
- autobump bio/infernal/cmpress (#2676) (7e690c7)
- autobump bio/infernal/cmscan (#2675) (89eac39)
- autobump bio/jellyfish/count (#2643) (68d8bd6)
- autobump bio/jellyfish/dump (#2645) (d3823f8)
- autobump bio/jellyfish/histo (#2642) (26c3123)
- autobump bio/jellyfish/merge (#2644) (2acb46b)
- autobump bio/last/lastal (#2632) (0090d1a)
- autobump bio/last/lastal (#2646) ([aecf702](https://www.github.co...