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V1.1.0 #101

Merged
merged 38 commits into from
Nov 17, 2022
Merged

V1.1.0 #101

merged 38 commits into from
Nov 17, 2022

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sokrypton
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final merge into main

sokrypton and others added 30 commits October 16, 2022 21:15
@sokrypton
Update README.md
c78b888
@sokrypton
Update README.md
d0a4484
@sokrypton
typo
574af1b
@sokrypton
typo
448b39d
@sokrypton
Update README.md
fa4be37
@sokrypton
adding initial code from Shihao
5918d1a
@sokrypton
cleanup (#91)
3b4af5a 
* mpnn: moving decoding_order logic from sample.py/score.py to model.py
* mpnn: moving notebook logic to model.py
* mpnn: Update proteinmpnn_in_jax.ipynb to avoid recompiling if shapes are the same
@sokrypton
Merge branch 'main' into v1.1.0
c31b84d
@sokrypton
increasing default traj_max from 500 to 10000
701815a
@sokrypton
adding option to specify custom traj for animate()
8538589
@sokrypton
Update model.py
b180a14
@sokrypton
adding pandas dataframes :D
cd85a66
@sokrypton
typo
0ebe3fa
@sokrypton
Update utils.py
82fbb97
@sokrypton
adding option to display any design
d7b4ed7
@sokrypton
Update proteinmpnn_in_jax.ipynb
2dec1f7
@sokrypton
removing broken code
6ea3399
@sokrypton
minor edits to make mpnn standalone
a9ed09c
@sokrypton
minor edits to avoid recompiling mpnn when rm_aa is updated
f1876d3
@sokrypton
cleanup; removing overly complicated option(s)
86ded38
@sokrypton
Update README.md
beedfda
@sokrypton
Update README.md
d68cad0
@sokrypton
Update README.md
5d90ac1
@sokrypton
adding check for blank fix_pos
c4b52d2
@sokrypton
adding logic to skip alternative amino acids during pdb parsing
e3fa9f8
@sokrypton
model._best moved to model._tmp["best"]
2d193c1
@sokrypton
Update README.md
8cd40c1
@sokrypton
Merge branch 'main' into v1.1.0
e59a1b3
@sokrypton
add download option to colab notebook
2805408
@sokrypton
minor edit to accept pdb paths
eadf811
@sokrypton sokrypton merged commit 63680fd into main Nov 17, 2022
@sokrypton sokrypton deleted the v1.1.0 branch November 17, 2022 00:31
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@sokrypton