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Update doc/command-line.md
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Co-authored-by: Tessa Pierce Ward <[email protected]>
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ctb and bluegenes authored May 4, 2021
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Expand Up @@ -888,8 +888,11 @@ This behavior is triggered by the requested output filename --
* to save to a Zip file collection, use `.zip`;
* to save signature files to a directory, use a name ending in `/`; the directory will be created if it doesn't exist;

If none of these file extensions is detected, output will be written in the JSON `.sig` format, either to the provided output filename or to stdout.

All of these save formats can be loaded by sourmash commands, too.


### Loading all signatures under a directory

All of the `sourmash` commands support loading signatures from
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