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Feat: on-disk RevIndex based on RocksDB #2230
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Commits on Sep 20, 2023
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try to skip md5sum derive typed builder for GatherResult expose md5 start moving mastiff remove unused bigsi and sbt indices Expose iterator methods for Signature remove unused function preparing for MinHashOps Bump version, there will be many breaking changes... more splits default to large minhash, expose frozen use enum for MinHash thru FFI bug fixes and cleanup add c++ stdlib package for mamba fix finch feature try out roaring Add back check command initial update impl add semver check for rust bump once_cell fix rust ci start bringing #1943 more selection more picklist use dashmap in mem_revindex Revert "use dashmap in mem_revindex" This reverts commit 22727b7091dee2dbafd10ce707578c5085aa6cfc. bump rocksdb to 0.19 bump rocksdb to 0.20, bump MSRV to 1.60 update deps add cargo deny config use cibuildwheel configs in pyproject.toml flake cleanup fix cargo.lock tox updates don't worry with in-mem sigs for now rename mastiff to branchwater add revindex test wip collection clippy fixes start using camino for paths cargo fmt Implement MemStorage and from_paths and from_sigs cleanup Replace DatasetID with Idx Use 32-bits Idx, instead of 64 use enum_dispatch to avoid repeating code implement selection more widely working with protein in tests... add semver-checks save/load collection from rocksdb
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Commits on Sep 27, 2023
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Commits on Sep 29, 2023
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Commits on Sep 30, 2023
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Commits on Oct 9, 2023
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Deps: chrono version pin (#2798)
To install sourmash from mastiff branch in pyo3-branchwater, I need to bump chrono back to 0.4.28 (from 0.4.31) to avoid incompatibilities with `piz`.
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Merge remote-tracking branch 'refs/remotes/origin/lirber/mastiff' int…
…o lirber/mastiff
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Commits on Oct 18, 2023
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Commits on Oct 30, 2023
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Commits on Nov 1, 2023
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Commits on Nov 11, 2023
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Commits on Nov 16, 2023
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Commits on Nov 23, 2023
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Commits on Dec 1, 2023
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