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[WIP] Fix problem where tree search is truncated incorrectly. #244

Merged
merged 35 commits into from
Oct 25, 2017
Merged

[WIP] Fix problem where tree search is truncated incorrectly. #244

merged 35 commits into from
Oct 25, 2017

Commits on May 20, 2017

  1. add (failing) test for --best-only and similarity calculation

    @ctb
    ctb committed May 20, 2017
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Commits on Sep 17, 2017

  1. some simple Python API improvements + tests

    @ctb
    ctb committed Sep 17, 2017
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  2. support MinHash(..., scaled=val)

    @ctb
    ctb committed Sep 17, 2017
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  3. pass tests with new scaled convenience functions

    @ctb
    ctb committed Sep 17, 2017
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  4. reorder scaled args

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    ctb committed Sep 17, 2017
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  5. Merge branch 'master' into api/improvements

    @ctb
    ctb authored Sep 17, 2017
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Commits on Sep 18, 2017

  1. Merge branch 'master' into api/improvements

    @ctb
    ctb authored Sep 18, 2017
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Commits on Sep 19, 2017

  1. Merge remote-tracking branch 'origin/master' into bug/sbt_similarity

    @ctb
    ctb committed Sep 19, 2017
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  2. update tests after merge

    @ctb
    ctb committed Sep 19, 2017
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Commits on Sep 20, 2017

  1. remove unnecessary imports, refactor search a bit

    @ctb
    ctb committed Sep 20, 2017
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  2. fix SBT internal nodes to have metadata; added max_n_below to metadata

    @ctb
    ctb committed Sep 20, 2017
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  3. move search mechanics into sourmash_lib.search

    @ctb
    ctb committed Sep 20, 2017
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  4. move gather code into sourmash_lib.search

    @ctb
    ctb committed Sep 20, 2017
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  5. ugly fix to get --output-unassigned working!

    @ctb
    ctb committed Sep 20, 2017
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  6. rm whitespace

    @ctb
    ctb committed Sep 20, 2017
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  7. add in --traverse-directory to search and gather, along with tests

    @ctb
    ctb committed Sep 20, 2017
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  8. add -U to pip install

    @ctb
    ctb committed Sep 20, 2017
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  9. Merge branch 'master' into api/improvements

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  10. add --randomize to sourmash compute

    @ctb
    ctb committed Sep 20, 2017
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  11. add a nicer sbt API

    @ctb
    ctb committed Sep 20, 2017
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  12. Fixed a bug when loading minhashes with track_abundance, and a bunch … 

    …of tests for pickling
    @luizirber
    luizirber committed Sep 20, 2017
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  13. Merge branch 'master' of github.com:dib-lab/sourmash into api/improve… 

    …ments
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  14. Merge branch 'api/improvements' of github.com:dib-lab/sourmash into a… 

    …pi/improvements
    @ctb
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  15. clean up a test failure from merge

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    ctb committed Sep 20, 2017
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  16. Merge branch 'master' of github.com:dib-lab/sourmash into api/improve… 

    …ments
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  17. Merge branch 'master' of github.com:dib-lab/sourmash into api/improve… 

    …ments
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  18. Merge branch 'master' of github.com:dib-lab/sourmash into bug/sbt_sim… 

    …ilarity
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  19. Merge branch 'api/improvements' of github.com:dib-lab/sourmash into b… 

    …ug/sbt_similarity
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  20. update tests

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    ctb committed Sep 20, 2017
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Commits on Sep 21, 2017

  1. Merge branch 'master' of github.com:dib-lab/sourmash into bug/sbt_sim… 

    …ilarity
    @ctb
    ctb committed Sep 21, 2017
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Commits on Oct 1, 2017

  1. Merge branch 'master' into bug/sbt_similarity

    @ctb
    ctb authored Oct 1, 2017
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Commits on Oct 25, 2017

  1. Merge branch 'master' of github.com:dib-lab/sourmash into bug/sbt_sim… 

    …ilarity
    @ctb
    ctb committed Oct 25, 2017
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  2. fix tests after merge

    @ctb
    ctb committed Oct 25, 2017
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  3. add missing test file

    @ctb
    ctb committed Oct 25, 2017
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  4. Fix division problem

    @luizirber
    luizirber committed Oct 25, 2017
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