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MRG: update tutorial to remove bioconda & use sourmash-minimal #2972

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merged 2 commits into from
Feb 5, 2024
Merged

MRG: update tutorial to remove bioconda & use sourmash-minimal #2972

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update tutorial to remove bioconda
ctb Feb 5, 2024
4bba160
Merge branch 'latest' into rm_bioconda
ctb Feb 5, 2024
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13 changes: 1 addition & 12 deletions doc/tutorial-install.md
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Expand Up @@ -22,23 +22,12 @@ source ~/.bash_profile
```
otherwise, follow the instructions [here](https://github.com/conda-forge/miniforge#install).

## Add bioconda

sourmash is installed from the [bioconda software channel](https://bioconda.github.io/), so you'll need to add that to your config:

```
conda config --add channels defaults
conda config --add channels bioconda
conda config --add channels conda-forge
conda config --set channel_priority strict
```

## Install sourmash

To install sourmash, create a new environment named `smash` and install sourmash:

```
mamba create -y -n smash sourmash
mamba create -y -n smash sourmash-minimal
```

and then activate:
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