Updating Documentation #381
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| name: XGBoost-R-Tests | |
| on: [push, pull_request] | |
| env: | |
| R_PACKAGES: c('XML', 'data.table', 'ggplot2', 'DiagrammeR', 'Ckmeans.1d.dp', 'vcd', 'testthat', 'lintr', 'knitr', 'rmarkdown', 'e1071', 'cplm', 'devtools', 'float', 'titanic') | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| _R_CHECK_EXAMPLE_TIMING_CPU_TO_ELAPSED_THRESHOLD_: 2.5 | |
| permissions: | |
| contents: read # to fetch code (actions/checkout) | |
| jobs: | |
| lintr: | |
| runs-on: ${{ matrix.config.os }} | |
| name: Run R linters on OS ${{ matrix.config.os }}, R ${{ matrix.config.r }}, Compiler ${{ matrix.config.compiler }}, Build ${{ matrix.config.build }} | |
| strategy: | |
| matrix: | |
| config: | |
| - {os: ubuntu-latest, r: 'release'} | |
| env: | |
| R_REMOTES_NO_ERRORS_FROM_WARNINGS: true | |
| RSPM: ${{ matrix.config.rspm }} | |
| steps: | |
| - uses: actions/checkout@v2 | |
| with: | |
| submodules: 'true' | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| r-version: ${{ matrix.config.r }} | |
| - name: Cache R packages | |
| uses: actions/cache@v2 | |
| with: | |
| path: ${{ env.R_LIBS_USER }} | |
| key: ${{ runner.os }}-r-${{ matrix.config.r }}-5-${{ hashFiles('R-package/DESCRIPTION') }} | |
| restore-keys: ${{ runner.os }}-r-${{ matrix.config.r }}-5-${{ hashFiles('R-package/DESCRIPTION') }} | |
| - name: Install dependencies | |
| shell: Rscript {0} | |
| run: | | |
| install.packages(${{ env.R_PACKAGES }}, | |
| repos = 'http://cloud.r-project.org', | |
| dependencies = c('Depends', 'Imports', 'LinkingTo')) | |
| - name: Install igraph on Windows | |
| shell: Rscript {0} | |
| if: matrix.config.os == 'windows-latest' | |
| run: | | |
| install.packages('igraph', type='binary') | |
| - name: Run lintr | |
| run: | | |
| cd R-package | |
| R CMD INSTALL . | |
| # Disable lintr errors for now: https://github.com/dmlc/xgboost/issues/8012 | |
| Rscript tests/helper_scripts/run_lint.R || true | |
| test-with-R: | |
| runs-on: ${{ matrix.config.os }} | |
| name: Test R on OS ${{ matrix.config.os }}, R ${{ matrix.config.r }}, Compiler ${{ matrix.config.compiler }}, Build ${{ matrix.config.build }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| config: | |
| - {os: windows-latest, r: 'release', compiler: 'mingw', build: 'autotools'} | |
| - {os: windows-latest, r: 'release', compiler: 'msvc', build: 'cmake'} | |
| - {os: windows-latest, r: 'release', compiler: 'mingw', build: 'cmake'} | |
| env: | |
| R_REMOTES_NO_ERRORS_FROM_WARNINGS: true | |
| _R_CHECK_EXAMPLE_TIMING_CPU_TO_ELAPSED_THRESHOLD_: 2.5 | |
| RSPM: ${{ matrix.config.rspm }} | |
| steps: | |
| - uses: actions/checkout@v2 | |
| with: | |
| submodules: 'true' | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| r-version: ${{ matrix.config.r }} | |
| - name: Cache R packages | |
| uses: actions/cache@v2 | |
| with: | |
| path: ${{ env.R_LIBS_USER }} | |
| key: ${{ runner.os }}-r-${{ matrix.config.r }}-5-${{ hashFiles('R-package/DESCRIPTION') }} | |
| restore-keys: ${{ runner.os }}-r-${{ matrix.config.r }}-5-${{ hashFiles('R-package/DESCRIPTION') }} | |
| - name: Install dependencies | |
| shell: Rscript {0} | |
| if: matrix.config.os != 'windows-latest' | |
| run: | | |
| install.packages(${{ env.R_PACKAGES }}, | |
| repos = 'http://cloud.r-project.org', | |
| dependencies = c('Depends', 'Imports', 'LinkingTo')) | |
| - name: Install binary dependencies | |
| shell: Rscript {0} | |
| if: matrix.config.os == 'windows-latest' | |
| run: | | |
| install.packages(${{ env.R_PACKAGES }}, | |
| type = 'binary', | |
| repos = 'http://cloud.r-project.org', | |
| dependencies = c('Depends', 'Imports', 'LinkingTo')) | |
| - uses: actions/setup-python@v2 | |
| with: | |
| python-version: "3.8" | |
| architecture: 'x64' | |
| - name: Test R | |
| run: | | |
| python tests/ci_build/test_r_package.py --compiler='${{ matrix.config.compiler }}' --build-tool='${{ matrix.config.build }}' | |
| test-R-CRAN: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| config: | |
| - {r: 'release'} | |
| env: | |
| _R_CHECK_EXAMPLE_TIMING_CPU_TO_ELAPSED_THRESHOLD_: 2.5 | |
| MAKE: "make -j$(nproc)" | |
| steps: | |
| - uses: actions/checkout@v2 | |
| with: | |
| submodules: 'true' | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| r-version: ${{ matrix.config.r }} | |
| - uses: r-lib/actions/setup-tinytex@v2 | |
| - name: Install system packages | |
| run: | | |
| sudo apt-get update && sudo apt-get install libcurl4-openssl-dev libssl-dev libssh2-1-dev libgit2-dev pandoc pandoc-citeproc libglpk-dev | |
| - name: Cache R packages | |
| uses: actions/cache@v2 | |
| with: | |
| path: ${{ env.R_LIBS_USER }} | |
| key: ${{ runner.os }}-r-${{ matrix.config.r }}-5-${{ hashFiles('R-package/DESCRIPTION') }} | |
| restore-keys: ${{ runner.os }}-r-${{ matrix.config.r }}-5-${{ hashFiles('R-package/DESCRIPTION') }} | |
| - name: Install dependencies | |
| shell: Rscript {0} | |
| run: | | |
| install.packages(${{ env.R_PACKAGES }}, | |
| repos = 'http://cloud.r-project.org', | |
| dependencies = c('Depends', 'Imports', 'LinkingTo')) | |
| install.packages('igraph', repos = 'http://cloud.r-project.org', dependencies = c('Depends', 'Imports', 'LinkingTo')) | |
| - name: Check R Package | |
| run: | | |
| # Print stacktrace upon success of failure | |
| make Rcheck || tests/ci_build/print_r_stacktrace.sh fail | |
| tests/ci_build/print_r_stacktrace.sh success |