Phenopacket API

Express + Typescript + MongoDB stack for storing Phenopackets.

Getting started

.env settings

• DATABASE_URL="mongodb://localhost:27017/mongodb"

  URI to mongodb

• PORT="3000"

  Listen port

• ALLOWED_ORIGIN="http://localhost:5173"

  CORS allowed origin - frontend URI

• API_URL="http://localhost:3000"

  This API's URI (required for image uploads to work)

Using Docker (production mode)

1. docker compose -f docker-compose.yml up -d
2. Should be available on http://localhost:3000

Using Docker (development mode)

1. docker compose up -d
2. Should be available on http://localhost:3000

Local development mode

1. npm install
2. npm run dev
3. Should be available on http://localhost:3000

Generate Swagger apischema

npm install -g protobuf2swagger

protobuf2swagger

Version history

1.0.0

• Initial release

1.1.0

• Generate password for customformdata
• Backend status