Skip to content
/ Cellular_Morphological_Features-Improve-Prediction-of-Cytotoxicity--and-Proliferation-Related-Assay- Public

Cellular Morphological Features Improve Prediction of Cytotoxicity- and Proliferation-Related Assay Endpoints when Augmented with Molecular Fingerprints

2 stars 0 forks Branches Tags Activity
Star
Notifications You must be signed in to change notification settings

srijitseal/Cellular_Morphological_Features-Improve-Prediction-of-Cytotoxicity--and-Proliferation-Related-Assay-

BranchesTags

Folders and files

NameName
Last commit message
Last commit date

Latest commit

 

History

5 Commits
01_CP_KFold_singlematrix_KS_002.ipynb
01_CP_KFold_singlematrix_KS_002.ipynb
 
 
01_CP_KFold_singlematrix_KS_002_CombinedEndpoint.ipynb
01_CP_KFold_singlematrix_KS_002_CombinedEndpoint.ipynb
 
 
01_CP_cluster_singlematrix-CombinedEndpoint.ipynb
01_CP_cluster_singlematrix-CombinedEndpoint.ipynb
 
 
01_CP_cluster_singlematrix.ipynb
01_CP_cluster_singlematrix.ipynb
 
 
02_Erg_KFold_singlematrix.ipynb
02_Erg_KFold_singlematrix.ipynb
 
 
02_Erg_KFold_singlematrix_CombinedEndpoint.ipynb
02_Erg_KFold_singlematrix_CombinedEndpoint.ipynb
 
 
02_Erg_cluster_singlematrix-CombinedEndpoint.ipynb
02_Erg_cluster_singlematrix-CombinedEndpoint.ipynb
 
 
02_Erg_cluster_singlematrix.ipynb
02_Erg_cluster_singlematrix.ipynb
 
 
03_Erg_CP_KFold_singlematrix_KS_002.ipynb
03_Erg_CP_KFold_singlematrix_KS_002.ipynb
 
 
03_Erg_CP_KFold_singlematrix_KS_002_CombinedEndpoint.ipynb
03_Erg_CP_KFold_singlematrix_KS_002_CombinedEndpoint.ipynb
 
 
03_Erg_CP_cluster_singlematrix-CombinedEndpoint.ipynb
03_Erg_CP_cluster_singlematrix-CombinedEndpoint.ipynb
 
 
03_Erg_CP_cluster_singlematrix.ipynb
03_Erg_CP_cluster_singlematrix.ipynb
 
 
04_Morgan_KFold_singlematrix.ipynb
04_Morgan_KFold_singlematrix.ipynb
 
 
04_Morgan_KFold_singlematrix_CombinedEndpoint.ipynb
04_Morgan_KFold_singlematrix_CombinedEndpoint.ipynb
 
 
04_Morgan_cluster_singlematrix-CombinedEndpoint.ipynb
04_Morgan_cluster_singlematrix-CombinedEndpoint.ipynb
 
 
04_Morgan_cluster_singlematrix.ipynb
04_Morgan_cluster_singlematrix.ipynb
 
 
05_Morgan_CP_KFold_singlematrix_KS_002.ipynb
05_Morgan_CP_KFold_singlematrix_KS_002.ipynb
 
 
05_Morgan_CP_KFold_singlematrix_KS_002_CombinedEndpoint.ipynb
05_Morgan_CP_KFold_singlematrix_KS_002_CombinedEndpoint.ipynb
 
 
05_Morgan_CP_cluster_singlematrix-CombinedEndpoint.ipynb
05_Morgan_CP_cluster_singlematrix-CombinedEndpoint.ipynb
 
 
05_Morgan_CP_cluster_singlematrix.ipynb
05_Morgan_CP_cluster_singlematrix.ipynb
 
 
06_CP_FeatureImportance_KS_testset.ipynb
06_CP_FeatureImportance_KS_testset.ipynb
 
 
CenterMeanOVLP.csv
CenterMeanOVLP.csv
 
 
Cytotoxocity_CP_12ToxCast_HitCalls.csv
Cytotoxocity_CP_12ToxCast_HitCalls.csv
 
 
README.md
README.md
 
 
toxcast_Overlap.csv
toxcast_Overlap.csv
 
 

Repository files navigation

Cellular_Morphological_Features-Improve-Prediction-of-Cytotoxicity--and-Proliferation-Related-Assay-

Cellular Morphological Features Improve Prediction of Cytotoxicity- and Proliferation-Related Assay Endpoints when Augmented with Molecular Fingerprints

This repository contains code on leveraging cellular morphological features to predict cytotoxicity- and proliferation-related endpoints from ToxCast

Five types of descriptors: 01_CP_ 02_Erg_ 03_Erg_CP_ 04_Morgan_ 05_Morgan_CP_

Two types of evaluation cluster singlematrix (aggregated)

Endpoints are either: Assays 'hit' call endpoints or combined endpoint

About

Cellular Morphological Features Improve Prediction of Cytotoxicity- and Proliferation-Related Assay Endpoints when Augmented with Molecular Fingerprints

Resources

Readme
Activity

Stars

2 stars

Watchers

1 watching

Forks

0 forks
Report repository

Releases

No releases published

Packages

No packages published

Languages