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26 Open 72 Closed
26 Open 72 Closed
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Issues list

Can't read input files: "list index out of range"
#259 opened Oct 3, 2023 by kriskaykj
9
OverflowError: int too large to convert to float
#258 opened Aug 13, 2023 by MonsterLaplace
Time inconsistent reconciliation
#256 opened Jul 20, 2023 by tomas-najer
Can I input iqtree .treefile format
#255 opened Feb 18, 2023 by xsq2022
Everything Black
#253 opened Oct 12, 2022 by Alex-Grossi
Unable to to open empress GUI
#252 opened Oct 10, 2022 by bimbim1803
GUI: Save figure dialog box not showing up
#225 opened Aug 11, 2020 by ssantichaivekin
3
Remove time from cli argument and code or add time to all of them
#222 opened Aug 8, 2020 by ssantichaivekin
CLI: Clustering should output .csv
#215 opened Aug 7, 2020 by aremath
CLI add reconciliation visualization to reconcile command
#213 opened Aug 7, 2020 by aremath
CLI: Tell the user where files are created
#212 opened Aug 7, 2020 by aremath
CLI: Remove spurious output
#211 opened Aug 7, 2020 by aremath
1
Empress GUI Cluster PDV output is confusing enhancement New feature or request
#192 opened Jul 30, 2020 by aremath
1
cli: add useful error message when user enters invalid low and high event cost values for cost-regions enhancement New feature or request
#175 opened Jul 22, 2020 by JingyiRose
Reading reconciliation/recongraph from .csv enhancement New feature or request
#174 opened Jul 22, 2020 by aremath
Pop-up tkinter windows created by "One per cluster" not closed automatically when they become irrelevant enhancement New feature or request
#163 opened Jul 21, 2020 by Qing-Yang-1211
@ssantichaivekin
Remove matplotlib figures when unused to free memory in gui enhancement New feature or request
#128 opened Jul 11, 2020 by ssantichaivekin
1
@Qing-Yang-1211
Update deprecated readmes refactor Code style optimization
#97 opened Jun 24, 2020 by ssantichaivekin
1
Hide internal functions by using leading underscore refactor Code style optimization
#94 opened Jun 23, 2020 by ssantichaivekin
@ssantichaivekin
Clean up unittests recon_vis/test_Tree.py refactor Code style optimization
#79 opened Jun 17, 2020 by ssantichaivekin
4 tasks
@rlhadas
Diameter.py is mostly unused refactor Code style optimization
#62 opened Jun 7, 2020 by rlhadas
Replace dict with Reconciliation and ReconGraph data structures refactor Code style optimization
#30 opened May 29, 2020 by ssantichaivekin
2 tasks
DTLMedian.py documentation issues documentation Improvements or additions to documentation
#26 opened May 25, 2020 by rlhadas
Expose functionalities in DTLMedian.py to empress cli enhancement New feature or request
#25 opened May 25, 2020 by ssantichaivekin
Revisit how we deal with floating point costs bug Something isn't working
#18 opened May 20, 2020 by ssantichaivekin
2
ProTip! no:milestone will show everything without a milestone.