Change mcs calculation #97
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: CI | |
| on: | |
| # We run CI on pushes to the main branch | |
| push: | |
| branches: | |
| - main | |
| # and on all pull requests to the main branch | |
| pull_request: | |
| branches: | |
| - main | |
| # as well as upon manual triggers through the 'Actions' tab of the Github UI | |
| workflow_dispatch: | |
| jobs: | |
| build-and-test: | |
| name: Testing on ${{matrix.os}} (Python ${{matrix.python-version}}) | |
| runs-on: ${{matrix.os}} | |
| strategy: | |
| matrix: | |
| os: [ubuntu-latest, macos-latest, windows-latest] | |
| python-version: ["3.10", "3.11"] | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v4 | |
| with: | |
| # setuptools_scm requires a non-shallow clone of the repository | |
| fetch-depth: 0 | |
| - name: Add conda instance | |
| uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| auto-update-conda: true | |
| auto-activate-base: false | |
| python-version: ${{ matrix.python-version }} | |
| activate-environment: morph | |
| environment-file: environment-dev.yml | |
| - name: Install Python package | |
| run: | | |
| python -m pip install --no-deps . | |
| - name: Run Python tests | |
| run: | | |
| python -m pytest | |
| coverage: | |
| name: Coverage Testing | |
| runs-on: ubuntu-latest | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v4 | |
| - name: Add conda instance | |
| uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| auto-update-conda: true | |
| auto-activate-base: false | |
| python-version: 3.11 | |
| activate-environment: morph | |
| #environment-file: environment-dev.yml | |
| - name: add conda only dependencies | |
| run: | |
| conda install -c conda-forge python-elf | |
| - name: Install Python package | |
| run: | | |
| python -m pip install .[tests] | |
| - name: Run Python tests | |
| working-directory: ./tests | |
| run: | | |
| python -m pytest --cov --cov-report=xml | |
| - name: Upload coverage to Codecov | |
| uses: codecov/codecov-action@v4 | |
| with: | |
| fail_ci_if_error: true | |
| files: ./tests/coverage.xml | |
| env: | |
| CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }} |