Update software bundle dependencies to the newest versions #925

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Run time

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Job	Run time
Build Documentation	14m 56s
Tests (windows-latest, 3.11)	20m 18s
Tests (ubuntu-latest, 3.11)	12m 38s
Tests (macos-latest, 3.11)	21m 6s
coveralls	11s
	1h 9m 9s