Update pyspectral version in build_environment.yml #951
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: CI | |
| # https://docs.github.com/en/actions/reference/workflow-syntax-for-github-actions#concurrency | |
| # https://docs.github.com/en/developers/webhooks-and-events/events/github-event-types#pullrequestevent | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.event.number }}-${{ github.event.type }} | |
| cancel-in-progress: true | |
| on: [push, pull_request] | |
| env: | |
| CACHE_NUMBER: 1 | |
| jobs: | |
| # build website | |
| website: | |
| name: Build Documentation | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout source | |
| uses: actions/checkout@v4 | |
| with: | |
| lfs: true | |
| - name: Prepare System Environment | |
| run: | | |
| # opengl system libraries | |
| sudo apt-get update | |
| # Additional latex dependencies | |
| sudo apt-get -y install texlive-xetex texlive-latex-base texlive-fonts-recommended texlive-fonts-extra texlive-latex-extra latexmk | |
| sudo apt-get -y install dvipng | |
| - name: Setup Conda Environment | |
| uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| miniforge-variant: Mambaforge | |
| miniforge-version: latest | |
| use-mamba: true | |
| python-version: "3.11" | |
| activate-environment: test-environment | |
| - name: Set cache environment variables | |
| shell: bash -l {0} | |
| run: | | |
| echo "DATE=$(date +'%Y%m%d')" >> $GITHUB_ENV | |
| CONDA_PREFIX=$(python -c "import sys; print(sys.prefix)") | |
| echo "CONDA_PREFIX=$CONDA_PREFIX" >> $GITHUB_ENV | |
| - uses: actions/cache@v3 | |
| with: | |
| path: ${{ env.CONDA_PREFIX }} | |
| key: ubuntu-latest-3.10-conda-${{ hashFiles('continuous_integration/environment.yaml') }}-${{ env.DATE }}-${{ env.CACHE_NUMBER }} | |
| id: cache | |
| - name: Update environment | |
| run: mamba env update -n test-environment -f continuous_integration/environment.yaml | |
| if: steps.cache.outputs.cache-hit != 'true' | |
| - name: Install Polar2Grid | |
| shell: bash -l {0} | |
| run: | | |
| pip install --no-deps -e . | |
| - name: Build Polar2Grid Website | |
| shell: bash -l {0} | |
| run: | | |
| cd doc | |
| make clean | |
| make html SPHINXOPTS="-W --keep-going" | |
| - name: Build Geo2Grid Website | |
| shell: bash -l {0} | |
| run: | | |
| cd doc | |
| make clean | |
| make html POLAR2GRID_DOC="geo" SPHINXOPTS="-W --keep-going" | |
| - name: Build Polar2Grid PDF | |
| shell: bash -l {0} | |
| run: | | |
| cd doc | |
| make clean | |
| make latexpdf SPHINXOPTS="-W --keep-going" | |
| - name: Build Geo2Grid PDF | |
| shell: bash -l {0} | |
| run: | | |
| cd doc | |
| make clean | |
| make latexpdf POLAR2GRID_DOC="geo" SPHINXOPTS="-W --keep-going" | |
| test: | |
| name: Tests | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: true | |
| matrix: | |
| os: ["windows-latest", "ubuntu-latest", "macos-latest"] | |
| python-version: ["3.11"] | |
| env: | |
| PYTHON_VERSION: ${{ matrix.python-version }} | |
| OS: ${{ matrix.os }} | |
| ACTIONS_ALLOW_UNSECURE_COMMANDS: true | |
| steps: | |
| - name: Checkout source | |
| uses: actions/checkout@v4 | |
| - name: Setup Conda Environment | |
| uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| miniforge-variant: Mambaforge | |
| miniforge-version: latest | |
| use-mamba: true | |
| python-version: ${{ matrix.python-version }} | |
| activate-environment: test-environment | |
| - name: Set cache environment variables | |
| shell: bash -l {0} | |
| run: | | |
| echo "DATE=$(date +'%Y%m%d')" >> $GITHUB_ENV | |
| CONDA_PREFIX=$(python -c "import sys; print(sys.prefix)") | |
| echo "CONDA_PREFIX=$CONDA_PREFIX" >> $GITHUB_ENV | |
| - uses: actions/cache@v3 | |
| with: | |
| path: ${{ env.CONDA_PREFIX }} | |
| key: ${{ matrix.os }}-${{matrix.python-version}}-conda-${{ hashFiles('continuous_integration/environment.yaml') }}-${{ env.DATE }}-${{ env.CACHE_NUMBER }} | |
| id: cache | |
| - name: Update environment | |
| run: mamba env update -n test-environment -f continuous_integration/environment.yaml | |
| if: steps.cache.outputs.cache-hit != 'true' | |
| - name: Install Polar2Grid on non-Windows | |
| shell: bash -l {0} | |
| run: | | |
| pip install --no-deps -e . | |
| if: runner.os != 'Windows' | |
| - name: Run unit tests on non-Windows | |
| shell: bash -l {0} | |
| run: | | |
| pytest --cov=polar2grid polar2grid/tests --cov-report= | |
| polar2grid --help | |
| geo2grid --help | |
| if: runner.os != 'Windows' | |
| - name: Install Polar2Grid on Windows | |
| shell: powershell | |
| run: | | |
| pip install --no-deps -e . | |
| if: runner.os == 'Windows' | |
| - name: Run help usage tests on Windows | |
| shell: powershell | |
| # Windows CI doesn't have enough memory for the tests | |
| # pytest --cov=polar2grid polar2grid/tests --cov-report= | |
| # if ($LASTEXITCODE) { exit $LASTEXITCODE } | |
| run: | | |
| polar2grid --help | |
| if ($LASTEXITCODE) { exit $LASTEXITCODE } | |
| geo2grid --help | |
| if: runner.os == 'Windows' | |
| - name: Coveralls Parallel | |
| uses: AndreMiras/coveralls-python-action@develop | |
| with: | |
| flag-name: run-${{ matrix.test_number }} | |
| parallel: true | |
| if: runner.os == 'Linux' | |
| coveralls: | |
| needs: [test] | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Coveralls Finished | |
| uses: AndreMiras/coveralls-python-action@develop | |
| with: | |
| parallel-finished: true |