Add initial FCI Level 1c NetCDF reader #969
Workflow file for this run
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| name: CI | |
| # https://docs.github.com/en/actions/reference/workflow-syntax-for-github-actions#concurrency | |
| # https://docs.github.com/en/developers/webhooks-and-events/events/github-event-types#pullrequestevent | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.event.number }}-${{ github.event.type }} | |
| cancel-in-progress: true | |
| on: [push, pull_request] | |
| env: | |
| CACHE_NUMBER: 1 | |
| jobs: | |
| # build website | |
| website: | |
| name: Build Documentation | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout source | |
| uses: actions/checkout@v4 | |
| with: | |
| lfs: true | |
| - name: Prepare System Environment | |
| run: | | |
| # opengl system libraries | |
| sudo apt-get update | |
| # Additional latex dependencies | |
| sudo apt-get -y install texlive-xetex texlive-latex-base texlive-fonts-recommended texlive-fonts-extra texlive-latex-extra latexmk | |
| sudo apt-get -y install dvipng | |
| - name: Setup Conda Environment | |
| uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| miniforge-variant: Mambaforge | |
| miniforge-version: latest | |
| use-mamba: true | |
| python-version: "3.11" | |
| activate-environment: test-environment | |
| - name: Set cache environment variables | |
| shell: bash -l {0} | |
| run: | | |
| echo "DATE=$(date +'%Y%m%d')" >> $GITHUB_ENV | |
| CONDA_PREFIX=$(python -c "import sys; print(sys.prefix)") | |
| echo "CONDA_PREFIX=$CONDA_PREFIX" >> $GITHUB_ENV | |
| - uses: actions/cache@v3 | |
| with: | |
| path: ${{ env.CONDA_PREFIX }} | |
| key: ubuntu-latest-3.10-conda-${{ hashFiles('continuous_integration/environment.yaml') }}-${{ env.DATE }}-${{ env.CACHE_NUMBER }} | |
| id: cache | |
| - name: Update environment | |
| run: mamba env update -n test-environment -f continuous_integration/environment.yaml | |
| if: steps.cache.outputs.cache-hit != 'true' | |
| - name: Install Polar2Grid | |
| shell: bash -l {0} | |
| run: | | |
| pip install --no-deps -e . | |
| - name: Build Polar2Grid Website | |
| shell: bash -l {0} | |
| run: | | |
| cd doc | |
| make clean | |
| make html SPHINXOPTS="-W --keep-going" | |
| - name: Build Geo2Grid Website | |
| shell: bash -l {0} | |
| run: | | |
| cd doc | |
| make clean | |
| make html POLAR2GRID_DOC="geo" SPHINXOPTS="-W --keep-going" | |
| - name: Build Polar2Grid PDF | |
| shell: bash -l {0} | |
| run: | | |
| cd doc | |
| make clean | |
| make latexpdf SPHINXOPTS="-W --keep-going" | |
| - name: Build Geo2Grid PDF | |
| shell: bash -l {0} | |
| run: | | |
| cd doc | |
| make clean | |
| make latexpdf POLAR2GRID_DOC="geo" SPHINXOPTS="-W --keep-going" | |
| test: | |
| name: Tests | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: true | |
| matrix: | |
| os: ["windows-latest", "ubuntu-latest", "macos-latest"] | |
| python-version: ["3.11"] | |
| env: | |
| PYTHON_VERSION: ${{ matrix.python-version }} | |
| OS: ${{ matrix.os }} | |
| ACTIONS_ALLOW_UNSECURE_COMMANDS: true | |
| steps: | |
| - name: Checkout source | |
| uses: actions/checkout@v4 | |
| - name: Setup Conda Environment | |
| uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| miniforge-variant: Mambaforge | |
| miniforge-version: latest | |
| use-mamba: true | |
| python-version: ${{ matrix.python-version }} | |
| activate-environment: test-environment | |
| - name: Set cache environment variables | |
| shell: bash -l {0} | |
| run: | | |
| echo "DATE=$(date +'%Y%m%d')" >> $GITHUB_ENV | |
| CONDA_PREFIX=$(python -c "import sys; print(sys.prefix)") | |
| echo "CONDA_PREFIX=$CONDA_PREFIX" >> $GITHUB_ENV | |
| - uses: actions/cache@v3 | |
| with: | |
| path: ${{ env.CONDA_PREFIX }} | |
| key: ${{ matrix.os }}-${{matrix.python-version}}-conda-${{ hashFiles('continuous_integration/environment.yaml') }}-${{ env.DATE }}-${{ env.CACHE_NUMBER }} | |
| id: cache | |
| - name: Update environment | |
| run: mamba env update -n test-environment -f continuous_integration/environment.yaml | |
| if: steps.cache.outputs.cache-hit != 'true' | |
| - name: Install Polar2Grid on non-Windows | |
| shell: bash -l {0} | |
| run: | | |
| pip install --no-deps -e . | |
| if: runner.os != 'Windows' | |
| - name: Run unit tests on non-Windows | |
| shell: bash -l {0} | |
| run: | | |
| pytest --cov=polar2grid polar2grid/tests --cov-report= | |
| polar2grid --help | |
| geo2grid --help | |
| if: runner.os != 'Windows' | |
| - name: Install Polar2Grid on Windows | |
| shell: powershell | |
| run: | | |
| pip install --no-deps -e . | |
| if: runner.os == 'Windows' | |
| - name: Run help usage tests on Windows | |
| shell: powershell | |
| # Windows CI doesn't have enough memory for the tests | |
| # pytest --cov=polar2grid polar2grid/tests --cov-report= | |
| # if ($LASTEXITCODE) { exit $LASTEXITCODE } | |
| run: | | |
| polar2grid --help | |
| if ($LASTEXITCODE) { exit $LASTEXITCODE } | |
| geo2grid --help | |
| if: runner.os == 'Windows' | |
| - name: Coveralls Parallel | |
| uses: AndreMiras/coveralls-python-action@develop | |
| with: | |
| flag-name: run-${{ matrix.test_number }} | |
| parallel: true | |
| if: runner.os == 'Linux' | |
| coveralls: | |
| needs: [test] | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Coveralls Finished | |
| uses: AndreMiras/coveralls-python-action@develop | |
| with: | |
| parallel-finished: true |