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Get pseudobulk api #137

Merged
merged 25 commits into from
May 20, 2024
Merged

Commits on Apr 16, 2024

  1. create pseudobulk api

    myushen committed Apr 16, 2024
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Commits on Apr 18, 2024

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Commits on Apr 24, 2024

  1. link pseudobulk to cloud

    myushen committed Apr 24, 2024
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  2. fix an testthat example issue

    myushen committed Apr 24, 2024
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Commits on May 1, 2024

  1. Squashed commit of the following:

    commit 7000b1f
    Merge: 9be13af d1e3d81
    Author: Stefano Mangiola <[email protected]>
    Date:   Wed May 1 09:55:55 2024 +0930
    
        Merge pull request stemangiola#139 from myushen/master
    
        update testthat
    
    commit d1e3d81
    Merge: 969198f 02a985e
    Author: Mengyuan Shen <[email protected]>
    Date:   Mon Apr 29 15:03:33 2024 +1000
    
        Merge branch 'master' of https://github.com/myushen/CuratedAtlasQueryR
    
    commit 969198f
    Author: Mengyuan Shen <[email protected]>
    Date:   Mon Apr 29 15:03:02 2024 +1000
    
        a test query for import API
    
    commit 02a985e
    Merge: 9f5cc9b 9be13af
    Author: Mengyuan Shen <[email protected]>
    Date:   Mon Apr 29 11:12:16 2024 +1000
    
        Merge branch 'stemangiola:master' into master
    
    commit 9f5cc9b
    Author: Mengyuan Shen <[email protected]>
    Date:   Mon Apr 29 11:11:24 2024 +1000
    
        update testthat for consistency reason
    
    commit 9be13af
    Merge: fe980d6 05065f2
    Author: Stefano Mangiola <[email protected]>
    Date:   Fri Apr 26 11:28:21 2024 +0930
    
        Merge pull request stemangiola#138 from myushen/master
    
        fix parquet pattern
    
    commit 05065f2
    Merge: 9b7f47d fe980d6
    Author: Mengyuan Shen <[email protected]>
    Date:   Wed Apr 24 15:10:33 2024 +1000
    
        Merge branch 'master' of https://github.com/myushen/CuratedAtlasQueryR
    
    commit 9b7f47d
    Author: Mengyuan Shen <[email protected]>
    Date:   Wed Apr 24 15:05:01 2024 +1000
    
        fix parquet pattern issue
    
    commit fe980d6
    Author: stemangiola <[email protected]>
    Date:   Tue Apr 23 10:10:33 2024 +1000
    
        add make_pseudobulk
    
    commit 9dace73
    Merge: 27580bc 5484756
    Author: stemangiola <[email protected]>
    Date:   Tue Apr 23 10:06:51 2024 +1000
    
        fic conflicts pull
    
        Merge branch 'master' of github.com:stemangiola/HCAquery
    
        Conflicts:
        	DESCRIPTION
    
    commit 27580bc
    Author: stemangiola <[email protected]>
    Date:   Tue Apr 23 10:04:40 2024 +1000
    
        add pseudobulk calculation and update scripts
    
    commit 5484756
    Merge: 2e9d487 f672472
    Author: Mangiola Laboratory <[email protected]>
    Date:   Tue Mar 26 16:49:41 2024 +1100
    
        Merge pull request stemangiola#135 from myushen/export-cache-functions
    
        import api
    
    commit 2e9d487
    Merge: b80627b b6ee0b2
    Author: Mangiola Laboratory <[email protected]>
    Date:   Tue Mar 26 13:56:35 2024 +1100
    
        Merge pull request stemangiola#134 from myushen/export-cache-functions
    
        import api
    
    commit cc6ebd8
    Merge: 83022ab 1ddec5e
    Author: Mengyuan Shen <[email protected]>
    Date:   Wed Mar 20 10:19:53 2024 +1100
    
        Merge branch 'import-api'
    
    commit 83022ab
    Author: Mengyuan Shen <[email protected]>
    Date:   Mon Feb 26 14:59:36 2024 +1100
    
        fix vignettes
    
    commit 34f4d37
    Author: Mengyuan Shen <[email protected]>
    Date:   Mon Feb 26 14:58:14 2024 +1100
    
        generate metadata from local cache
    myushen committed May 1, 2024
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  2. unify functions

    myushen committed May 1, 2024
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  6. try again

    myushen committed May 1, 2024
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Commits on May 2, 2024

  1. try again test-query

    myushen committed May 2, 2024
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Commits on May 3, 2024

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Commits on May 6, 2024

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  2. Squashed commit of the following:

    commit 84e6f94
    Author: Mengyuan Shen <[email protected]>
    Date:   Mon May 6 14:52:09 2024 +1000
    
        allow selected gene names in pseudobulk
    
    commit 8c0b8dc
    Author: Mengyuan Shen <[email protected]>
    Date:   Fri May 3 16:15:08 2024 +1000
    
        adapt metadata sample-level columns to pseudobulk
    myushen committed May 6, 2024
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Commits on May 8, 2024

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Commits on May 13, 2024

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Commits on May 16, 2024

  1. add get_pseudobulk test query

    myushen committed May 16, 2024
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  3. fix assay name

    myushen committed May 16, 2024
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Commits on May 17, 2024

  1. Merge branch 'get-pseudobulk-api-debug' of github.com:myushen/Curated…

    …AtlasQueryR into get-pseudobulk-api-debug
    myushen committed May 17, 2024
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Commits on May 20, 2024

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