SCRABBLE_PAPER

Data and analysis for the paper "Single-cell RNA-Seq imputation constrained by bulk RNA-Seq data".

This folder includes all data and R scripts or python scripts of benchmarks.They are

• SimulationData_Strategy1 (Figure 2 and Supplementary Figures related to Figure 2)
• SimulationData_Strategy2 (Figure 3 and Figure 5 and Supplementary Figures related to Figure 3 or Figure 5)
• ES_SCRB (Figures 4A and 4B and Supplementary Figures related to Figure 4A or 4B)
• E14 (Figures 4C and 4D and Supplementary Figures related to Figure 4C or 4D)
• ESC_human (Figure 6 and Supplementary Figures related to Figure 6)
• MCA (Figure 7 and Supplementary Figures related to Figure 7)

Help

Please feel free to contact Tao Peng ([email protected]) if you have any questions about the software.

Reference

Tao Peng et al. Single-cell RNA-Seq imputation constrained by bulk RNA-Seq data. Submitted. 2018