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'x@assays' is not parallel to 'x' #96
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Ok, so there were two things here. One is that the wrong dimensions were being used when reading These should both be fixed now in release ( |
Thank you for the fast adjustments, I will check if this works on my side before the weekend. |
Okay I already checked, this indeed solves the issue for me! Thank you for the quick fix 🙏 |
I would like to jump in on this. I am working with the dataset from GSE174188 (
GSE174188_CLUES1_adjusted.h5ad.gz
).In
R/4.1.3, zellkonverter 1.4.0
, I was able to simply obtain the data withHowever, after switching to
R/4.2.0, zellkoverter 1.8.0
, the same code leads to following error:It turns out that that the warning "raw 'X' matrix does not support transposition and has been skipped" is the underlying cause of the assays and rowdata dimensions being mismatched, which finally results in SummarizedExperiment complaining.
In the light of this thread, I also tried with
zellkonverter 1.11.0
, but this did not resolve my issues.Originally posted by @jgilis in #42 (comment)
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