fixxed memory error when accessing empty mode for gll,rmc and vtg dat… #262

Workflow file for this run

	# SPDX-FileCopyrightText: 2022 - 2023 Peter Urban, Ghent University
	#
	# SPDX-License-Identifier: CC0-1.0

	name: CI

	on:
	push:
	branches: [ main ]

	paths-ignore:
	- '.github/workflows/python-package*'
	- '.github/workflows/cibuildwheels*'
	- '.github/workflows/conda*'
	- '.github/workflows/test_*'
	- 'conda.recipe/*'
	- '*.md'
	- 'doc/*'
	#paths:
	# - "**meson.build"
	# - "**.cpp"
	# - "**.c"
	# - "**.h"
	pull_request:
	branches: [ main ]

	paths-ignore:
	- '.github/workflows/python-package*'
	- '.github/workflows/cibuildwheels*'
	- '.github/workflows/conda*'
	- '.github/workflows/test_*'
	- 'conda.recipe/*'
	- '*.md'
	- 'doc/*'
	#paths:
	# - "**meson.build"
	# - "**.cpp"
	# - "**.c"
	# - "**.h"


	# make sure that multiple jobs don't run for the same action (new commits cancel old jobs when they are still running)
	# Souce Ralf Gommers (commit to meson-python)
	concurrency:
	group: ${{ github.workflow }}-${{ github.head_ref \|\| github.run_id }}
	cancel-in-progress: true

	# env:
	# Customize the CMake build type here (Release, Debug, RelWithDebInfo, etc.)
	#BUILD_TYPE: Release

	jobs:
	linux:
	name: ci on ${{matrix.container}}
	strategy:
	fail-fast: false
	matrix:
	include:
	- { container: 'ghcr.io/themachinethatgoesping/ubuntu-dep:latest',
	ccache: 'true',
	pip2: 'pip install -r requirements.txt --break-system-packages' }
	- { container: 'ubuntu:22.04',
	ccache: 'true',
	pre-dep : 'apt update && apt-get install -y sudo git git-lfs',
	dep : 'sudo DEBIAN_FRONTEND=noninteractive apt-get install -y build-essential ccache pkg-config cmake python3-pip libboost-all-dev libcurl4-openssl-dev',
	pip : 'pip install meson meson-python ninja pytest numpy',
	pip2: 'pip install -r requirements.txt'}
	- { container: 'archlinux',
	pre-dep : 'pacman -Syu --noconfirm; pacman -Syy sudo git git-lfs --noconfirm',
	dep : 'sudo pacman -Syy --noconfirm base-devel ccache pkg-config cmake python-pip boost curl',
	pip : 'pip install meson meson-python ninja pytest numpy --break-system-packages',
	pip2: 'pip install -r requirements.txt --break-system-packages' }

	runs-on: ubuntu-latest
	container: ${{matrix.container}}

	steps:
	- name: install perquisites
	if: ${{matrix.pre-dep}}
	run: ${{matrix.pre-dep}}

	- name: checkout main repository
	uses: actions/checkout@v3
	with:
	submodules: recursive
	lfs: false

	- name: ccache
	if: ${{ matrix.ccache }}
	uses: hendrikmuhs/[email protected]
	with:
	key: super-ci-${{ matrix.container }} # name for the cache

	- name: install dependencies (c++)
	if: ${{matrix.dep}}
	run: ${{matrix.dep}}

	- name: install dependencies (meson & python)
	if: ${{matrix.pip}}
	run: ${{matrix.pip}}

	- name: configure meson
	run: meson setup builddir/; meson configure builddir -Dpython.install_env=auto -Dprefix=/usr/;

	- name: compile project
	run: meson compile -C builddir/

	- name: test (cpp)
	run: meson test -C builddir/ --print-errorlogs

	- name: install project
	run: meson install -C builddir/

	- name: install pip requirements
	if: ${{matrix.pip2}}
	run: ${{matrix.pip2}}

	- name: test (pytest)
	run: pytest -v

	- uses: actions/upload-artifact@v1
	if: failure()
	with:
	name: ${{matrix.container}}_testlog
	path: builddir/meson-logs/testlog.txt


	build-on-windows:
	name: ci on windows
	strategy:
	fail-fast: false
	matrix:
	boost-version: [1.84.0]
	boost-version_: [1_84_0]
	boost-modules: [--with-iostreams]
	include:
	- toolset: vc143
	compiler: clang-cl
	cpp_std: c++20
	# - toolset: msvc
	# compiler: sccache cl
	# cpp_std: c++20


	env:
	#CC: msvc-14.32
	CC: ${{matrix.compiler}}
	CXX: ${{matrix.compiler}}
	#this is where we will download ninja later
	NINJA: d:/ninja.exe

	runs-on: windows-latest
	#container: python:latest #pull directly from dockerhub
	steps:

	- name: setup python
	uses: actions/setup-python@v3
	with:
	python-version: '3.11'

	- name: Set up Clang
	uses: egor-tensin/setup-clang@v1
	with:
	version: latest

	# make sure meson can find msvc
	- uses: TheMrMilchmann/setup-msvc-dev@v2
	with:
	arch: x64
	#toolset: 14.34

	- name: checkout main repository
	uses: actions/checkout@v3
	with:
	submodules: recursive
	lfs: false

	- name: sccache
	uses: hendrikmuhs/[email protected]
	with:
	key: super-ci-win # name for the cache
	variant: sccache # supports windows


	- name: Cache Boost
	id: cache-boost
	uses: actions/cache@v3
	with:
	path: c:\Boost
	#key: windows-msvc-14.32-boost-${{matrix.boost-version}}-${{matrix.boost-modules}}
	key: windows-${{matrix.toolset}}-boost-${{matrix.boost-version}}-${{matrix.boost-modules}}

	- name: Install dependencies on windows
	if: steps.cache-boost.outputs.cache-hit != 'true'
	run: \|
	Invoke-WebRequest -Uri https://boostorg.jfrog.io/artifactory/main/release/${{matrix.boost-version}}/source/boost_${{matrix.boost-version_}}.7z -outfile boost.7z
	7z x boost.7z
	cd .\boost_${{matrix.boost-version_}}\
	.\bootstrap.bat ${{matrix.toolset}}
	.\b2.exe install --variant=release --threading=multi --link=static ${{matrix.boost-modules}}
	cd ..
	#rm -rv boost*

	- name: install dependencies (meson & python)
	run: pip install meson meson-python pytest numpy
	#run: pip install meson meson-python pytest numpy ninja

	- name: download ninja long path
	run : \|
	Invoke-WebRequest -Uri https://raw.githubusercontent.com/themachinethatgoesping/tools/main/ninja-windows/ninja.exe -OutFile d:\ninja.exe

	- name: check ninja executable path
	run: \|
	$env:NINJA
	d:\ninja.exe --version

	- name: configure meson
	run: \|
	meson setup builddir/ -D"python.install_env=auto" -Ddefault_library=static -D"python.install_env=auto" -Dcpp_std=${{matrix.cpp_std}}

	- name: compile project
	run: meson compile -C builddir/

	- name: test (cpp)
	#run: meson test -C builddir/ --print-errorlogs
	# meson test does not work with the custom ninja executable
	run: ninja test -C builddir/ --verbose

	- name: install project
	run: meson install -C builddir/

	- name: install pip requirements
	run: pip install -r requirements.txt

	- name: test (pytest)
	run: pytest -v

	- uses: actions/upload-artifact@v1
	if: failure()
	with:
	name: Windows_Meson_testlog
	path: builddir/meson-logs/testlog.txt

	macos:
	name: ci on macOS
	runs-on: macos-latest
	strategy:
	fail-fast: false
	matrix:
	cxx_compiler: ["$(brew --prefix llvm@16)/bin/clang++"]

	# env does not work here because is resolved as string and not command
	# env:
	# CXX: ${{ matrix.cxx_compiler }}

	steps:

	- uses: actions/setup-python@v3
	with:
	python-version: '3.11'

	- name: checkout main repository
	uses: actions/checkout@v3
	with:
	submodules: recursive
	lfs: false

	- name: ccache
	uses: hendrikmuhs/[email protected]
	with:
	key: super-ci-mac # name for the cache

	# install clang 15
	- run: brew install coreutils llvm@16

	- run: brew install libomp boost

	- run: pip install meson meson-python ninja pytest numpy

	- name: configure meson
	run: CXX=${{ matrix.cxx_compiler }} meson setup builddir/; meson configure builddir -Dpython.install_env=auto

	- name: compile project
	run: meson compile -C builddir/

	- name: test (cpp)
	run: meson test -C builddir/ --print-errorlogs

	- name: install project
	run: meson install -C builddir/

	- name: install pip requirements
	run: pip install -r requirements.txt

	- name: test (pytest)
	run: pytest -v

	- uses: actions/upload-artifact@v1
	if: failure()
	with:
	name: ${{matrix.container}}_testlog
	path: builddir/meson-logs/testlog.txt

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fixxed memory error when accessing empty mode for gll,rmc and vtg dat… #262

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