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Change to quantile argument to quantile levels #1208

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merged 5 commits into from
Sep 26, 2024

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@topepo topepo commented Sep 25, 2024

For #1203

After this, we will

  • merge the quantile-mode branch to main,
  • update GHA for the extra branch, and
  • will create a PR for censored with updates to those engines.

@topepo topepo marked this pull request as ready for review September 25, 2024 22:08
@topepo topepo requested a review from hfrick September 25, 2024 22:08
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@topepo topepo merged commit 861a64a into quantile-mode Sep 26, 2024
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@topepo topepo deleted the change-to-quantile-levels branch September 26, 2024 19:38
topepo added a commit that referenced this pull request Oct 11, 2024
* add a quantile regression mode to test with

* update type checkers

* avoid confusion with global all_models object

* add quantile_level argument to set_mode()

* initial data for quantreg

* some initial tests

* fix some issues

* enable quantile prediction

* tests for quantreg

* Quantile predictions output constructor (#1191)

* small change to predict checks

* add vctrs for quantiles and test, refactor *_rq_preds

* revise tests

* Apply some of the suggestions from code review

Co-authored-by: Simon P. Couch <[email protected]>

* rename tests on suggestion from code review

* export missing funs from vctrs for formatting

* convert errors to snapshot tests

* pass call through input check

* update snapshots for caller_env

* rename to parsnip_quantiles, add format snapshot tests

* Apply suggestions from @topepo

Co-authored-by: Max Kuhn <[email protected]>

* rename parsnip_quantiles to quantile_pred

* rename parsnip_quantiles to quantile_pred and add vector probability check

* fix: two bugs introduced earlier

* add formatting tests for single quantile

* replace walk with a loop to avoid "Error in map()"

* remove row/col names

* adjust quantile_pred format

* as_tibble method

* updated NEWS file

* add PR number

* small new update

* helper methods

* update docs

* re-enable quantiles prediction for #1203

* update some tests

* no longer needed

* use tibble::new_tibble

* braces

* test as_tibble

* remove print methods

---------

Co-authored-by: Simon P. Couch <[email protected]>
Co-authored-by: Max Kuhn <[email protected]>
Co-authored-by: ‘topepo’ <‘[email protected]’>

* quantile regression updates for new hardhat model (#1207)

* bump hardhat version

* remove parts now in hardhat

* update for new hardhat version

* quantile_levels (plural now)

* news update

* typo

* rename helper function

* run CI on PRs from branches

* forgotten remote

* actions for edited PRs

* plural

* expand branch list

* export function for censored to use

* updated snapshot

* remake snapshot

* Revert "remake snapshot"

This reverts commit 954e326.

* updated snapshot

* Update R/arguments.R

Co-authored-by: Hannah Frick <[email protected]>

* typo

* changes from reviewer feedback

---------

Co-authored-by: ‘topepo’ <‘[email protected]’>
Co-authored-by: Hannah Frick <[email protected]>

* Change to `quantile` argument to `quantile levels` (#1208)

* quantile -> quantile_levels for #1203

* defer test until censored updates in new PR

* update docs for quantile_levels

* update test

* disable quantile predictions for surv_reg

---------

Co-authored-by: ‘topepo’ <‘[email protected]’>

* post conflict merge updates

* update news

* version bump and fix typo

* revert GHA branches

* small bug fix

* Apply suggestions from code review

Co-authored-by: Hannah Frick <[email protected]>
Co-authored-by: Emil Hvitfeldt <[email protected]>

* don't export median

* add call arg

* added documentation on model

* add mode

* convert error to warning

* remove rankdeficient

* added skip

* add deprecated `quantile` arg back in

* remove numeric prediction

---------

Co-authored-by: ‘topepo’ <‘[email protected]’>
Co-authored-by: Daniel McDonald <[email protected]>
Co-authored-by: Simon P. Couch <[email protected]>
Co-authored-by: Hannah Frick <[email protected]>
Co-authored-by: Emil Hvitfeldt <[email protected]>
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