GenomeTools genome analysis system.
An ultrafast tool for genome-wide survey of microsatellites and primer design
The Read Origin Protocol (ROP) is a computational protocol that aims to discover the source of all reads, including those originating from repeat sequences, recombinant B and T cell receptors, and microbial communities.
A video player component for looping inner sections of video. Packaged as an npm library and cdn script.
A bioinformatics best-practice analysis pipeline for calling structural variants (SVs), copy number variants (CNVs) and repeat region expansions (RREs) from short DNA reads
A framework for extracting telomeric reads from single-molecule sequencing experiments, describing their sequence variation and motifs, and for haplotype inference.
a python package for finding tandem repeats from genomic sequences
Non-Repetitive Parts Calculator - Automated design and discovery of non-repetitive genetic parts for engineering stable genetic systems
Some of the mapping and normalization scripts used in our NCB paper PMID:31209294
A command line tool to try executing a shell command and retry if it fails. Optionally repeat with time intervals even if it succeeds. 🔁 https://www.npmjs.com/package/try-cli
SLURM-ready bash scripts to run the complete REPET pipeline
De novo repeat inference from long reads
Identify and characterize repeat expansions in long read data
Find palindrome/inverted repeats in contigs/scaffolds
De novo repeat inference from long reads
Mask genomic repeats and low-complexity regions for the Scrambling in the Tree of Life project
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