OTUStalker is a small software tool designed to be compatible with QIIME (v1.8.0). Its purpose is to retrieve data pertinent to a single taxonomic group, from a larger (presumably mixed) data set, therefore allowing the user to concentrate their efforts on the specific taxa of interest. In effect, OTUStalker is taking the place of a targeted PCR…
Ribo-seq focused Oligo Design pipeline for experiment-specific Depletion of Ribosomal RNAs
A tool to identify and extract the commonly used ITS folding motifs from a 16s-23s rRNA sequence.
Perl libraries for handling rRNA annotated multiple sequence alignments, and more
Tools for metagenomic assembly processing.
PipeCraft2 is a Graphical User Interface (GUI) for various metabarcoding pipelines
Repository for V-Xtractor an open-source, high-throughput software tool to identify and extract hypervariable regions of small subunit (16S/18S) ribosomal RNA gene sequences
🧪 New pipeline for detecting pseudouridine modification on RNA (BID-seq, etc)
Protist Ribosomal Reference database (PR2) - SSU rRNA gene database
Mapping-Assisted Targeted-Assembly for Metagenomics
Amplicon sequencing analysis workflow using DADA2 and QIIME2
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