A versatile pairwise aligner for genomic and spliced nucleotide sequences
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Updated
Oct 16, 2024 - C
#
spliced-alignment
Here are 6 public repositories matching this topic...
Rust bindings to minimap2 library
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Updated
Aug 20, 2024 - Rust
✂️ Deep learning-based splice site predictor that improves spliced alignments
rna-seq
deep-learning
annotation
alignment
convolutional-neural-networks
residual-networks
spliced-alignment
splice-junctions
splicing
transcript-assembly
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Updated
Oct 24, 2024 - C++
RNA-seq pipeline for raw sequence alignment and transcript/gene quantification.
bash
bioinformatics
rna-seq
genomics
ngs
gene-expression
bioinformatics-pipeline
alignment
star
quantification
transcriptomics
illumina
rsem
ngs-analysis
fastqc
spliced-alignment
stringtie
splice-aware
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Updated
Oct 28, 2024 - Python
all the scripts to reproduce the results in the splam paper
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Updated
May 10, 2024 - Python
This repository provides scripts for RNA-Seq data analysis using JunctionSeq and QoRTs, enabling quality control, differential splicing analysis, and generation of browser tracks.
bioinformatics
quality-control
rna-seq
genomics
data-analysis
transcriptomics
rna-seq-analysis
spliced-alignment
splice-junctions
differential-splicing
splice-variants
junctionseq
qorts
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Updated
Jun 7, 2023 - R
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