Merge pull request #126 from umccr/more-flexible-config-rename

More flexible config

htsget-config/Cargo.toml

@@ -9,9 +9,18 @@ s3-storage = []
 default = ["s3-storage"]
 
 [dependencies]
+noodles = { version = "0.29", features = ["core"] }
 serde = { version = "1.0", features = ["derive"] }
+serde_with = "2.1"
 serde_regex = "1.1"
 regex = "1.6"
-envy = "0.4"
+figment = { version = "0.10", features = ["env", "toml"] }
+clap = { version = "4.0", features = ["derive", "env"] }
 tracing = "0.1"
-tracing-subscriber = { version = "0.3", features = ["registry", "env-filter"] }
+tracing-subscriber = { version = "0.3", features = ["registry", "env-filter"] }
+toml = "0.5"
+http = "0.2"
+http-serde = "1.1"
+
+[dev-dependencies]
+figment = { version = "0.10", features = ["test"] }

htsget-config/config.toml

@@ -0,0 +1,45 @@
+ticket_server_addr = '127.0.0.1:8080'
+ticket_server_cors_allow_credentials = false
+ticket_server_cors_allow_origins = ['http://localhost:8080']
+ticket_server_cors_allow_headers = 'All'
+ticket_server_cors_allow_methods = 'All'
+ticket_server_cors_max_age = 86400
+ticket_server_cors_expose_headers = []
+
+data_server = "None"
+#data_server_disabled = true
+data_server_addr = '127.0.0.1:8082'
+data_server_local_path = 'data'
+data_server_serve_at = '/data'
+data_server_cors_allow_credentials = false
+data_server_cors_allow_origins = ['http://localhost:8080']
+data_server_cors_allow_headers = 'All'
+data_server_cors_allow_methods = 'All'
+data_server_cors_max_age = 86400
+data_server_cors_expose_headers = []
+
+[[resolvers]]
+regex = '.*'
+substitution_string = '$0'
+
+[resolvers.storage_type]
+type = 'Local'
+scheme = 'Http'
+authority = '127.0.0.1:8081'
+local_path = 'data'
+path_prefix = '/data'
+
+[resolvers.guard]
+allow_reference_names = 'All'
+allow_fields = 'All'
+allow_tags = 'All'
+allow_formats = [
+    'BAM',
+    'CRAM',
+    'VCF',
+    'BCF',
+]
+allow_classes = [
+    'body',
+    'header',
+]