Create 2024-07-26-Sebastes_fasciatus-fSebFas1.md

[bhkoo]

Social media post for Sebastes fasciatus (Acadian redfish), fSebFas1 curation

[bgruening]

Thanks @bhkoo! We will take care and propose a template. Thanks a lot!

[nekrut]

This should not go to Matrix or Slack. This is for external use, so LinkedIn, Mastodon, and BlueSky only. It should also propagate to central panes om usegalaxy.*

[github-actions]

👋 Hello! I'm your friendly social media assistant. Below are the previews of this post:
posts/2024/2024-07-26-Sebastes_fasciatus-fSebFas1.md

linkedin-galaxyproject

We have finished the curation of Sebastes fasciatus (Acadian redfish), fSebFas1. The files have been uploaded to GenomeArk: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Sebastes_fasciatus/fSebFas1/assembly_curated/. Curation was done by Kirsty McCaffrey, with QCing by Jo Collins.

Karyotyping indicated 24 chromosome pairs. No sex chromosomes where identified. 99.25% of sequence was assigned to chromosomes in this primary assembly.

Note: For chromosome 7 between 0-788Kb and for chromosome 19 between 0-1.6Mb, the curation team was unsure of the ordering of the fragments in these regions.

Statistics for primary assembly:
+++Assembly summary+++:
Num scaffolds: 203
Total scaffold length: 833835073
Average scaffold length: 4107561.94
Scaffold N50: 36314571
Scaffold auN: 35186726.68
Scaffold L50: 11
Largest scaffold: 46713506
Smallest scaffold: 6737
Num contigs: 674
Total contig length: 833750873
Average contig length: 1237019.10
Contig N50: 7769413
Contig auN: 9481484.12
Contig L50: 32
Largest contig: 28624128
Smallest contig: 141
Num gaps in scaffolds: 471
Total gap length in scaffolds: 84200
Average gap length in scaffolds: 178.77
Gap N50 in scaffolds: 200
Gap auN in scaffolds: 188.12
Gap L50 in scaffolds: 211
Largest gap in scaffolds: 200
Smallest gap in scaffolds: 100
Base composition (A:C:G:T): 246189749:170749526:170284260:246527338
GC content %: 40.90
Num soft-masked bases: 0
Num segments: 674
Total segment length: 833750873
Average segment length: 1237019.10
Num gaps: 471
Num paths: 203

mastodon-eu-freiburg

We have finished the curation of Sebastes fasciatus (Acadian redfish), fSebFas1. The files have been uploaded to GenomeArk: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Sebastes_fasciatus/fSebFas1/assembly_curated/. Curation was done by Kirsty McCaffrey, with QCing by Jo Collins. (1/4)

Karyotyping indicated 24 chromosome pairs. No sex chromosomes where identified. 99.25% of sequence was assigned to chromosomes in this primary assembly.

Note: For chromosome 7 between 0-788Kb and for chromosome 19 between 0-1.6Mb, the curation team was unsure of the ordering of the fragments in these regions.

Statistics for primary assembly:
+++Assembly summary+++:
Num scaffolds: 203
Total scaffold length: 833835073
Average scaffold length: 4107561.94
Scaffold N50: 36314571
Scaffold (2/4)

auN: 35186726.68
Scaffold L50: 11
Largest scaffold: 46713506
Smallest scaffold: 6737
Num contigs: 674
Total contig length: 833750873
Average contig length: 1237019.10
Contig N50: 7769413
Contig auN: 9481484.12
Contig L50: 32
Largest contig: 28624128
Smallest contig: 141
Num gaps in scaffolds: 471
Total gap length in scaffolds: 84200
Average gap length in scaffolds: 178.77
Gap N50 in scaffolds: 200
Gap auN in scaffolds: 188.12
Gap L50 in scaffolds: 211
Largest gap in scaffolds: 200 (3/4)

Smallest gap in scaffolds: 100
Base composition (A:C:G:T): 246189749:170749526:170284260:246527338
GC content %: 40.90
Num soft-masked bases: 0
Num segments: 674
Total segment length: 833750873
Average segment length: 1237019.10
Num gaps: 471
Num paths: 203

#VGP #EBP #UseGalaxy (4/4)

bluesky-galaxyproject

We have finished the curation of Sebastes fasciatus (Acadian redfish), fSebFas1. The files have been uploaded to GenomeArk: https://genomeark.s3.amazonaws.com/index.html?prefix=species/Sebastes_fasciatus/fSebFas1/assembly_curated/. Curation was done by Kirsty McCaffrey, with QCing by Jo (1/7)

Collins. (2/7)

Karyotyping indicated 24 chromosome pairs. No sex chromosomes where identified. 99.25% of sequence was assigned to chromosomes in this primary assembly.

Note: For chromosome 7 between 0-788Kb and for chromosome 19 between 0-1.6Mb, the curation team was unsure of the ordering of the (3/7)

fragments in these regions.

Statistics for primary assembly:
+++Assembly summary+++:
Num scaffolds: 203
Total scaffold length: 833835073
Average scaffold length: 4107561.94
Scaffold N50: 36314571
Scaffold auN: 35186726.68
Scaffold L50: 11
Largest scaffold: 46713506
Smallest scaffold: 6737 (4/7)

Num contigs: 674
Total contig length: 833750873
Average contig length: 1237019.10
Contig N50: 7769413
Contig auN: 9481484.12
Contig L50: 32
Largest contig: 28624128
Smallest contig: 141
Num gaps in scaffolds: 471
Total gap length in scaffolds: 84200
Average gap length in scaffolds: 178.77 (5/7)

Gap N50 in scaffolds: 200
Gap auN in scaffolds: 188.12
Gap L50 in scaffolds: 211
Largest gap in scaffolds: 200
Smallest gap in scaffolds: 100
Base composition (A:C:G:T): 246189749:170749526:170284260:246527338
GC content %: 40.90
Num soft-masked bases: 0
Num segments: 674
Total segment (6/7)

length: 833750873
Average segment length: 1237019.10
Num gaps: 471
Num paths: 203

@ebpgenome.bsky.social
#UseGalaxy (7/7)

[bgruening]

The image could be automatically retrieved from Wikipedia I think. See here: https://grafana.com/blog/2024/07/12/obirdability-how-to-build-an-observability-system-for-bird-songs/?utm_source=grafana_news&utm_medium=rss

[arash77]

We can turn this into an image or link to it to make it look better.

[arash77]

For example, something like this could be helpful:
https://gist.github.com/arash77/df994b093023e3acb7053147df8871d3