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dgarijo committed Dec 31, 2023
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1 change: 0 additions & 1 deletion doc/configuration/config.properties
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Expand Up @@ -26,7 +26,6 @@ licenseIconURL=https://i.creativecommons.org/l/by/2.0/88x31.png
logo="https://example.org/logo.svg"
ontologyName=Example
ontologyPrefix=exo
modified="15 April, 2023"
ontologyNamespaceURI=https://w3id.org/example
previousVersionURI=https://w3id.org/example/1.0.0
publisher=Ontology Engineering Group
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3 changes: 1 addition & 2 deletions doc/configuration/configuration_doc.md
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Expand Up @@ -9,6 +9,7 @@ abstract=An example ontology
backwardCompatibleWith=https://w3id.org/example/1.0.0
citeAs="add some citattion text here."
dateCreated="13 Nov, 2022"
dateIssued=
dateModified="15 Nov, 2022"
authors=First Author;Second Author
authorsURI=http://example.org/author1;http://example.org/author2
Expand All @@ -24,15 +25,13 @@ DOI=
funder=
fundingGrant=
incompatibleWith=
issued=
images=image1.png;image2.png
licenseURI=http://creativecommons.org/licenses/by/2.0/
licenseName=CC-BY
licenseIconURL=https://i.creativecommons.org/l/by/2.0/88x31.png
logo="https://example.org/logo.svg"
ontologyName=Example
ontologyPrefix=exo
modified="15 April, 2023"
ontologyNamespaceURI=https://w3id.org/example
previousVersionURI=https://w3id.org/example/1.0.0
publisher=Ontology Engineering Group
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14 changes: 7 additions & 7 deletions doc/metadataGuide/guide.md
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Expand Up @@ -45,7 +45,7 @@ The table below shows which ontology metadata annotations are recognized in WIDO
|Abstract |[dc:abstract], [dcterms:abstract]|abstract |[Sec 3.2.4] **[OPTIONAL]**|[Text]|[ontology](#onto), [config]|
|Backwards compatible|[owl:backwardCompatibleWith] |backwardCompatibleWith|[Sec 3.3.3] **[OPTIONAL]**|[URI] |[ontology](#onto), [config]|
|Bibliographic citation|[dcterms:bibliographicCitation], [schema:citation]|citeAs|[Sec 3.6.2] **[OPTIONAL]**|[Text]|[ontology](#onto), [config]|
|Creation date|[dcterms:created], [schema:dateCreated], [prov:generatedAtTime], [pav:createdOn], [doap:created]|creationDate|[Sec 3.4.2] **[OPTIONAL]**|[Text]|[ontology](#onto), [config]|
|Creation date|[dcterms:created], [schema:dateCreated], [prov:generatedAtTime], [pav:createdOn], [doap:created]|dateCreated|[Sec 3.4.2] **[OPTIONAL]**|[Text]|[ontology](#onto), [config]|
|Creators|[dcterms:creator], [dc:creator], [schema:creator], [pav:createdBy], [pav:authoredBy], [prov:wasAttributedTo], [doap:developer], [foaf:maker]|authors, authorsURI, authorsInstitution, authorsInstitutionURI|[Sec 3.5.1] **[RECOMMENDED]**|[Text] or [Person] or [BNode]|[ontology](#onto), [config]|
|Contributors|[dcterms:contributor], [dc:contributor], [schema:contributor], [pav:contributedBy], [doap:documenter], [doap:maintainer], [doap:helper], [doap:translator]|contributors, contributorsURI, contributorsInstitution, contributorsInstitutionURI|[Sec 3.5.2] **[RECOMMENDED]**|[Text] or [Person] or [BNode]|[ontology](#onto), [config]|
|Description|[dc:description], [dcterms:description], [schema:description], [rdfs:comment], [skos:note], [doap:description], [doap:shortdesc]|description|[Sec 3.2.3] **[OPTIONAL]**|[Text]|[ontology](#onto), [config]|
Expand All @@ -56,13 +56,13 @@ The table below shows which ontology metadata annotations are recognized in WIDO
|Funding grants |[schema:funding] |fundingGrant|[Sec 3.5.5] **[OPTIONAL]**|[Text] or [URI]|[ontology](#onto), [config]|
|Incompatible with |[owl:incompatibleWith] |incompatibleWith|[Sec 3.3.4] **[OPTIONAL]** |[URI] |[ontology](#onto), [config]|
|Imported ontologies |[owl:imports] |importedOntologyNames, importedOntologyURIs|N/A **[RECOMMENDED]** (good practice in ontology engineering) | [URI] | [ontology](#onto), [config]|
|Issued date |[dcterms:issued], [schema:dateIssued] |issued |[Sec 3.4.4] **[OPTIONAL]** |[Text] |[ontology](#onto), [config]|
|Issued date |[dcterms:issued], [schema:dateIssued] |dateIssued |[Sec 3.4.4] **[OPTIONAL]** |[Text] |[ontology](#onto), [config]|
|License|[dc:rights], [dcterms:license], [schema:license], [cc:license], [doap:license]|licenseName, licenseURI, licenseIconURL|[Sec 3.7] **[OPTIONAL]**|[Text] or [URI]|[ontology](#onto), [config]|
|Logo |[foaf:logo], [schema:logo] |logo |[Sec 3.8.1] **[OPTIONAL]** |[URI] |[ontology](#onto), [config]|
|Name|[rdfs:label], [mod:acronym], [schema:alternateName], [skos:prefLabel]|ontologyName|[Sec 3.2.1] **[RECOMMENDED]**|[Text]|[ontology](#onto), [config]|
|Namespace prefix |[vann:preferredNamespacePrefix]|ontologyPrefix |[Sec 3.1.2] **[RECOMMENDED]**|[Text] |[ontology](#onto), [config]|
|Namespace URI |[vann:preferredNamespaceUri] |ontologyNamespaceURI|[Sec 3.1.1] **[RECOMMENDED]**|[URI] |[ontology](#onto), [config]|
|Modification date|[dcterms:modified], [schema:dateModified] [pav:lastUpdatedOn]|modified|[Sec 3.4.3] **[OPTIONAL]**|[Text] |[ontology](#onto), [config]|
|Modification date|[dcterms:modified], [schema:dateModified] [pav:lastUpdatedOn]|dateModified|[Sec 3.4.3] **[OPTIONAL]**|[Text] |[ontology](#onto), [config]|
|Previous version |[dc:replaces], [dcterms:replaces], [prov:wasRevisionOf], [pav:previousVersion], [owl:priorVersion]|previousVersionURI|[Sec 3.4.1] **[RECOMMENDED]**|[URI]|[ontology](#onto), [config]|
|Publisher|[dcterms:publisher], [dc:publisher], [schema:publisher]|publisher, publisherURI, publisherInstitution, publisherInstitutionURI|[Sec 3.5.3] **[OPTIONAL]**|[Text] or [Organization] or [BNode]|[ontology](#onto), [config]|
|Similar resources|[rdfs:seeAlso] | |[Sec 3.9] **[OPTIONAL]** |[Text] |[ontology](#onto), [config]|
Expand Down Expand Up @@ -141,7 +141,7 @@ The following `Turtle` code block shows sample annotations for each of the metad
foaf:fundedBy <https://example.org/fundingOrganization> ;
schema:funding <https://example.org/fundingGrant> ;
widoco:introduction "A paragraph with the introduction section of the documentation about your resource"@en ;
widoco:rdfxmlSerialization "https://example.org/serialization/ontology.xml"^^xsd:anyURI ;
widoco:rdfxmlSerialization "https://example.org/serialization/ontology.xml"^^xsd:anyURI ;
owl:versionInfo "1.0.1" .
#If content negotiation is enabled, the widoco:rdfxmlSerialization annotation may not be needed.
```
Expand Down Expand Up @@ -214,7 +214,6 @@ Create a `config.properties` file and use the `-confFile` option to invoke Widoc
abstract=An example ontology
backwardCompatibleWith=https://w3id.org/example/1.0.0
citeAs="add some citattion text here."
creationDate="13 Nov, 2022"
authors=First Author;Second Author
authorsURI=http://example.org/author1;http://example.org/author2
authorsInstitution=First author institution;Second author institution
Expand All @@ -224,6 +223,9 @@ contributorsURI=http://example.org/contributor1;http://example.org/contributor2
contributorsInstitution=First contributor institution;Second contributor institution
contributorsInstitutionURI=https://isi.edu/;https://isi.edu/
description=A description of what the ontology does goes here
dateCreated="13 Nov, 2022"
dateIssued="14 Nov, 2022"
dateModified="15 April, 2023"
diagram="https://example.org/diagram.svg"
extendedOntologyNames=test1; test2
extendedOntologyURIs=http://example.org/test1; http://example.org/test2
Expand All @@ -234,14 +236,12 @@ incompatibleWith=https://w3id.org/example/0.0.1
importedOntologyNames=Imported Ontology 1; Imported Ontology 2
importedOntologyURIs=http://example.org/test11; http://example.org/test22
introduction=A brief text for the introduction section may be written here.
issued=
licenseURI=http://creativecommons.org/licenses/by/2.0/
licenseName=CC-BY
licenseIconURL=https://i.creativecommons.org/l/by/2.0/88x31.png
logo="https://example.org/logo.svg"
ontologyName=The Cohort Ontology
ontologyPrefix=exo
modified="15 April, 2023"
ontologyNamespaceURI=https://w3id.org/example
previousVersionURI=https://w3id.org/example/1.0.0
publisher=
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