Normalize snarls #2336
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Normalize snarls #2336
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modified: src/algorithms/0_demo_final_0.cpp
Fixed bug in msa_converter
modified: src/subcommand/mod_main.cpp
Changes to be committed: modified: src/algorithms/0_demo_final_0.cpp modified: src/algorithms/0_demo_final_0.hpp
…e-oriented approach tidied away. On branch normalize_snarls Changes to be committed: new file: src/algorithms/0_draft_haplotype_realignment.cpp new file: src/algorithms/0_draft_haplotype_realignment.hpp new file: src/algorithms/0_old_drafts/0_demo_final_0_(before_code_clean_and_includes_non_path_oriented_approach).cpp new file: src/algorithms/0_old_drafts/0_demo_final_old_0-diff_extension_for_not_at_source.cpp new file: src/algorithms/0_old_drafts/0_demo_final_old_0-only_source_paths.cpp new file: src/algorithms/0_old_drafts/0_demo_final_old_0-only_source_paths.hpp modified: src/subcommand/mod_main.cpp
On branch normalize_snarls Changes to be committed: modified: src/algorithms/0_draft_haplotype_realignment.cpp modified: src/algorithms/0_draft_haplotype_realignment.hpp deleted: src/algorithms/0_old_drafts/0_demo_final_0_(before_code_clean_and_includes_non_path_oriented_approach).cpp deleted: src/algorithms/0_old_drafts/0_demo_final_old_0-diff_extension_for_not_at_source.cpp deleted: src/algorithms/0_old_drafts/0_demo_final_old_0-only_source_paths.cpp deleted: src/algorithms/0_old_drafts/0_demo_final_old_0-only_source_paths.hpp new file: src/subcommand/0_normalize_main.cpp
Changes to be committed: modified: Makefile
get updated mod_main.cpp.
…pe_realignment.cpp to debug move embedded paths.
…te/vg into normalize_snarls
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@Robin-Rounthwaite Do you want this PR to actually merge? Does this want to be a draft PR representing your whole normalizer project? |
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Thanks for asking, Adam! I'm not sure what this is, and didn't intend to make a pull request. I must have done it by accident. |
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