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@vib-singlecell-nf

VIB-SingleCell-NF

Pipelines for single-cell data in Nextflow DSL2. Developed and maintained by the Stein Aerts lab, Yvan Saeys lab, and Janssen Pharmaceutica.

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  1. vsn-pipelines vsn-pipelines Public archive

    A repository of pipelines for single-cell data in Nextflow DSL2

    Nextflow 75 31

  2. vsn-pipelines-examples vsn-pipelines-examples Public

    Configs and results for example data

    4

Repositories

Showing 10 of 31 repositories
  • vsn-pipelines Public archive

    A repository of pipelines for single-cell data in Nextflow DSL2

    vib-singlecell-nf/vsn-pipelines’s past year of commit activity
    Nextflow 75 GPL-3.0 31 62 13 Updated Apr 19, 2023
  • vsn-pipelines-examples Public

    Configs and results for example data

    vib-singlecell-nf/vsn-pipelines-examples’s past year of commit activity
    4 GPL-3.0 0 0 0 Updated Aug 25, 2021
  • template Public template

    A template repository for adding new tools to VIB-SingleCell-NF

    vib-singlecell-nf/template’s past year of commit activity
    Nextflow 1 GPL-3.0 0 0 0 Updated Jan 19, 2021
  • trimgalore Public archive

    A repository for the Trim Galore module of the vib-singlecell-nf pipeline

    vib-singlecell-nf/trimgalore’s past year of commit activity
    Nextflow 0 0 0 0 Updated Dec 8, 2020
  • star Public archive

    A repository for the star module of the vib-singlecell-nf pipeline

    vib-singlecell-nf/star’s past year of commit activity
    Nextflow 0 0 0 0 Updated Dec 8, 2020
  • sratoolkit Public archive

    A repository for the sratoolkit module of the vib-singlecell-nf pipeline

    vib-singlecell-nf/sratoolkit’s past year of commit activity
    Nextflow 0 0 0 0 Updated Dec 8, 2020
  • soupx Public archive

    A repository for the soupx module of the vib-singlecell-nf pipeline

    vib-singlecell-nf/soupx’s past year of commit activity
    Nextflow 0 0 0 0 Updated Dec 8, 2020
  • sinto Public archive

    A repository for the Sinto module of the vib-singlecell-nf pipeline

    vib-singlecell-nf/sinto’s past year of commit activity
    Nextflow 0 0 0 0 Updated Dec 8, 2020
  • singlecelltoolkit Public archive

    A repository for the single_cell_toolkit module of the vib-singlecell-nf pipeline

    vib-singlecell-nf/singlecelltoolkit’s past year of commit activity
    Dockerfile 0 0 0 0 Updated Dec 8, 2020
  • scrublet Public archive

    A repository for the scrublet module of the vib-singlecell-nf pipeline

    vib-singlecell-nf/scrublet’s past year of commit activity
    Nextflow 1 1 0 0 Updated Dec 8, 2020
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