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@@ -75,7 +75,7 @@ int usage(void) { | |
<< " 1. If your analysis are based on reference GRCh38.d1.vd1, you can ignore the scan step by downloading the microsatellites information on our github directly. \n\n" | ||
<< " 2. If you don't have normal samples to build baseline(baseline step for tumor only sample detection), you can download the microsatellites information with baseline on our github or use -i option in pro module to set a hard cutoff directly.\n\n" | ||
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<< " If you have any questions, please contact with Peng Jia ([email protected]) or Kai Ye (kaiye.xjtu.edu.cn) .\n" | ||
<< " If you have any questions, please contact with Peng Jia ([email protected]) or Kai Ye (kaiye@xjtu.edu.cn) .\n" | ||
// << " 3. This module inherits from msisensor.If you used it for your work, please cite:\n" | ||
// << " Beifang Niu*, Kai Ye*, Qunyuan Zhang, Charles Lu, Mingchao Xie, Michael D. McLellan, Michael C. Wendl and Li Ding#.MSIsensor: microsatellite instability detection using paired tu-mor-normal sequence data. Bioinformatics 30, 1015–1016 (2014)." | ||
<< "\n\n"; | ||
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@@ -192,7 +192,7 @@ void ProUsage(void) { | |
<<" For diffferent requirements of users, we offer two choices.\n" | ||
<<" * If you have no normal sample to train a baseline, you can use hard threshold (-i option) to defined an unstable.\n" | ||
<<" * You can use also use soft threshold train by your self or download on our github(GRCh38.d1.vd1).\n\n" | ||
<<" If you have any questions, please contact with Peng Jia ([email protected]) or Kai Ye (kaiye.xjtu.edu.cn) .\n" | ||
<<" If you have any questions, please contact with Peng Jia ([email protected]) or Kai Ye (kaiye@xjtu.edu.cn) .\n" | ||
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<< std::endl; | ||
exit(1); | ||
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@@ -263,7 +263,7 @@ void TrainUsage(void){ | |
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<<"Note:\n\n" | ||
<<" If you have any questions, please contact with Peng Jia ([email protected]) or Kai Ye (kaiye.xjtu.edu.cn) .\n" | ||
<<" If you have any questions, please contact with Peng Jia ([email protected]) or Kai Ye (kaiye@xjtu.edu.cn) .\n" | ||
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<< std::endl; | ||
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