Test minimum version of deps (microsoft#574)

.github/dependabot.yml

@@ -1,13 +1,13 @@
 version: 2
 updates:
   - package-ecosystem: "pip"
-    directory: "/"
+    directory: "requirements"
     schedule:
       interval: "daily"
     # Allow up to 2 open pull requests at a time
     open-pull-requests-limit: 2
     ignore:
-      # tensorboard requires protobuf < 4
+      # torch, tensorboard require protobuf < 4
       - dependency-name: "protobuf"
       # segmentation-models-pytorch requires older timm, can't update
       - dependency-name: "timm"

.github/workflows/release.yaml

@@ -36,7 +36,7 @@ jobs:
         python-version: '3.10'
     - name: Install pip dependencies
       run: |
-        pip install -r requirements.txt
+        pip install -r requirements/requirements.txt
         pip list
     - name: Run integration checks
       run: pytest -m slow
@@ -52,7 +52,7 @@ jobs:
         python-version: '3.10'
     - name: Install pip dependencies
       run: |
-        pip install -r requirements.txt
+        pip install -r requirements/requirements.txt
         pip list
     - name: Run notebook checks
       env:

.github/workflows/style.yaml

@@ -21,7 +21,7 @@ jobs:
         python-version: '3.10'
     - name: Install pip dependencies
       run: |
-        pip install -r requirements.txt
+        pip install -r requirements/requirements.txt
         pip list
     - name: Run black checks
       run: black . --check --diff
@@ -37,7 +37,7 @@ jobs:
         python-version: '3.10'
     - name: Install pip dependencies
       run: |
-        pip install -r requirements.txt
+        pip install -r requirements/requirements.txt
         pip list
     - name: Run flake8 checks
       run: flake8
@@ -53,7 +53,7 @@ jobs:
         python-version: '3.10'
     - name: Install pip dependencies
       run: |
-        pip install -r requirements.txt
+        pip install -r requirements/requirements.txt
         pip list
     - name: Run isort checks
       run: isort . --check --diff
@@ -69,7 +69,7 @@ jobs:
         python-version: '3.10'
     - name: Install pip dependencies
       run: |
-        pip install -r requirements.txt
+        pip install -r requirements/requirements.txt
         pip list
     - name: Run pydocstyle checks
       run: pydocstyle
@@ -85,7 +85,7 @@ jobs:
         python-version: '3.10'
     - name: Install pip dependencies
       run: |
-        pip install -r requirements.txt
+        pip install -r requirements/requirements.txt
         pip list
     - name: Run pyupgrade checks
       run: pyupgrade --py37-plus $(find . -name "*.py")

.github/workflows/tests.yaml

@@ -21,7 +21,7 @@ jobs:
         python-version: '3.10'
     - name: Install pip dependencies
       run: |
-        pip install -r requirements.txt
+        pip install -r requirements/requirements.txt
         pip list
     - name: Run mypy checks
       run: mypy .
@@ -62,7 +62,30 @@ jobs:
       if: ${{ runner.os == 'Windows' }}
     - name: Install pip dependencies
       run: |
-        pip install -r requirements.txt
+        pip install -r requirements/requirements.txt
+        pip list
+    - name: Run pytest checks
+      run: pytest --cov=torchgeo --cov-report=xml
+    - name: Report coverage
+      uses: codecov/codecov-action@v2
+  minimum:
+    name: minimum
+    runs-on: ubuntu-latest
+    env:
+      MPLBACKEND: Agg
+    steps:
+    - name: Clone repo
+      uses: actions/checkout@v2
+    - name: Set up python
+      uses: actions/setup-python@v2
+      with:
+        python-version: '3.7'
+    - name: Install apt dependencies (Linux)
+      run: sudo apt-get install libgeos-dev libhdf5-dev unrar
+    - name: Install pip dependencies
+      run: |
+        pip install cython numpy==1.17.2  # needed by pycocotools
+        pip install -r requirements/requirements-min.txt
         pip list
     - name: Run pytest checks
       run: pytest --cov=torchgeo --cov-report=xml

.readthedocs.yaml

@@ -13,7 +13,7 @@ build:
 # Configuration of the Python environment to be used
 python:
    install:
-   - requirements: requirements.txt
+   - requirements: requirements/requirements.txt
    - requirements: docs/requirements.txt
    - method: pip
      path: .

environment.yml

@@ -4,48 +4,45 @@ channels:
   - conda-forge
   - open3d-admin  # for open3d
 dependencies:
-  - einops
-  - fiona>=1.5
-  - h5py
-  - numpy
+  - einops>=0.3
+  - fiona>=1.8
+  - h5py>=2.6
+  - numpy>=1.17.2
   - open3d>=0.11.2
   - pip
-  - protobuf<4
-  - pycocotools
+  - pycocotools>=2
   - pyproj>=2.2
   - python>=3.7
-  - pytorch>=1.7
+  - pytorch>=1.9
   - rarfile>=3
-  - rasterio>=1.0.16
+  - rasterio>=1.0.20
   - shapely>=1.3
   - torchvision>=0.10
   - pip:
-    - black>=21.4b0
+    - black[jupyter]>=21.8
     - flake8>=3.8
-    - ipywidgets>=7
     - isort[colors]>=5.8
-    - jupyterlab
     - kornia>=0.6.4
-    - laspy>=2.0.0
+    - laspy>=2
     - mypy>=0.900
     - nbmake>=0.1
     - nbsphinx>=0.8.5
     - omegaconf>=2.1
-    - opencv-python
+    - opencv-python>=3.4.2.17
     - pandas>=0.23.2
-    - pillow>=2.9
+    - pillow>=6.2
     - pydocstyle[toml]>=6.1
-    - pytest>=6
+    - pytest>=6.1.2
     - pytest-cov>=2.4
-    - pytorch-lightning>=1.3
+    - pytorch-lightning>=1.5.1
     - git+https://github.com/pytorch/pytorch_sphinx_theme
     - radiant-mlhub>=0.2.1
     - rtree>=1
-    - scikit-learn>=0.18
-    - scipy>=0.9
+    - scikit-learn>=0.21
+    - scipy>=1.2
     - segmentation-models-pytorch>=0.2
     - setuptools>=42
     - sphinx>=4
-    - timm>=0.2.1
+    - timm>=0.4.12
     - torchmetrics>=0.7
     - zipfile-deflate64>=0.2

pyproject.toml

@@ -1,7 +1,7 @@
 [build-system]
 requires = [
+    # setuptools 42+ required for metadata.license_files support in setup.cfg
     "setuptools>=42,<63",
-    "wheel<0.38",
 ]
 build-backend = "setuptools.build_meta"
 
@@ -58,18 +58,30 @@ filterwarnings = [
     "error",
 
     # Warnings raised by dependencies of dependencies, out of our control
+    # https://github.com/Cadene/pretrained-models.pytorch/issues/221
+    "ignore:.* is deprecated and will be removed in Pillow 10:DeprecationWarning:pretrainedmodels.datasets.utils",
     # https://github.com/pytorch/vision/pull/5898
+    "ignore:.* is deprecated and will be removed in Pillow 10:DeprecationWarning:torchvision.transforms.functional_pil",
     # https://github.com/rwightman/pytorch-image-models/pull/1256
-    "ignore:.*is deprecated and will be removed in Pillow 10:DeprecationWarning",
+    "ignore:.* is deprecated and will be removed in Pillow 10:DeprecationWarning:timm.data",
     # https://github.com/pytorch/pytorch/issues/72906
     # https://github.com/pytorch/pytorch/pull/69823
-    "ignore:distutils Version classes are deprecated. Use packaging.version instead.:DeprecationWarning",
+    "ignore:distutils Version classes are deprecated. Use packaging.version instead:DeprecationWarning:torch.utils.tensorboard",
     # https://github.com/PyTorchLightning/pytorch-lightning/issues/13256
-    "ignore:torch.distributed._sharded_tensor will be deprecated, use torch.distributed._shard.sharded_tensor instead:DeprecationWarning",
+    # https://github.com/PyTorchLightning/pytorch-lightning/pull/13261
+    "ignore:torch.distributed._sharded_tensor will be deprecated:DeprecationWarning:torch.distributed._sharded_tensor",
+    # https://github.com/rasterio/rasterio/issues/1742
+    # https://github.com/rasterio/rasterio/pull/1753
+    "ignore:Using or importing the ABCs from 'collections' instead of from 'collections.abc' is deprecated:DeprecationWarning:rasterio.crs",
+    # https://github.com/pytorch/pytorch/issues/60053
+    # https://github.com/pytorch/pytorch/pull/60059
+    "ignore:Named tensors and all their associated APIs are an experimental feature and subject to change:UserWarning:torch.nn.functional",
 
     # Expected warnings
     # pytorch-lightning warns us about using num_workers=0, but it's faster on macOS
     "ignore:The dataloader, .*, does not have many workers which may be a bottleneck:UserWarning",
+    # pytorch-lightning warns us about using the CPU when a GPU is available
+    "ignore:GPU available but not used.:UserWarning",
 
     # Unexpected warnings, worth investigating
     # pytorch-lightning is having trouble inferring the batch size for ChesapeakeCVPRDataModule and CycloneDataModule for some reason

requirements/requirements-min.txt

@@ -0,0 +1,54 @@
+# This file is not managed by dependabot. It documents the minimum version of our
+# dependencies that is supported.
+
+# setup
+setuptools==42.0.0
+
+# install
+einops==0.3.0
+fiona==1.8.0
+kornia==0.6.4
+matplotlib==3.3.0
+numpy==1.17.2
+omegaconf==2.1.0
+pillow==6.2.0
+pyproj==2.2.0
+pytorch-lightning==1.5.1
+rasterio==1.0.20
+rtree==1.0.0
+scikit-learn==0.21.0
+segmentation-models-pytorch==0.2.0
+shapely==1.3.0
+timm==0.4.12
+torch==1.9.0
+torchmetrics==0.7.0
+torchvision==0.10.0
+
+# datasets
+h5py==2.6.0
+laspy==2.0.0
+open3d==0.11.2
+opencv-python==3.4.2.17
+pandas==0.23.2
+pycocotools==2.0.0
+radiant-mlhub==0.2.1
+rarfile==3.0
+scipy==1.2.0
+zipfile-deflate64==0.2.0
+
+# docs
+nbsphinx==0.8.5
+sphinx==4.0.0
+
+# style
+black[jupyter]==21.8b0
+flake8==3.8.0
+isort[colors]==5.8.0
+pydocstyle[toml]==6.1.0
+pyupgrade==1.24.0
+
+# tests
+mypy==0.900
+nbmake==0.1
+pytest==6.1.2
+pytest-cov==2.4.0

requirements.txt → requirements/requirements.txt

@@ -4,7 +4,6 @@
 
 # setup
 setuptools==62.4.0
-wheel==0.37.1
 
 # install
 einops==0.4.1
@@ -47,7 +46,6 @@ scipy==1.7.3;python_version=='3.7'
 zipfile-deflate64==0.2.0
 
 # docs
-ipywidgets==7.7.0
 nbsphinx==0.8.9
 sphinx==5.0.2