Decrease width of loss function comparison barplots.

zjniu · Jan 27, 2024 · 09bc483 · 09bc483
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diff --git a/paper/8_generate_results/generate_results.ipynb b/paper/8_generate_results/generate_results.ipynb
diff --git a/paper/outputs/panels/autofluorescence.pdf b/paper/outputs/panels/autofluorescence.pdf
diff --git a/paper/outputs/panels/autofluorescence_deepblink.pdf b/paper/outputs/panels/autofluorescence_deepblink.pdf
diff --git a/paper/outputs/panels/autofluorescence_ground_truth.pdf b/paper/outputs/panels/autofluorescence_ground_truth.pdf
diff --git a/paper/outputs/panels/autofluorescence_piscis.pdf b/paper/outputs/panels/autofluorescence_piscis.pdf
diff --git a/paper/outputs/panels/autofluorescence_rs_fish.pdf b/paper/outputs/panels/autofluorescence_rs_fish.pdf
diff --git a/paper/outputs/panels/autofluorescence_trackmate.pdf b/paper/outputs/panels/autofluorescence_trackmate.pdf
diff --git a/paper/outputs/panels/comparison_algorithms.pdf b/paper/outputs/panels/comparison_algorithms.pdf
diff --git a/paper/outputs/panels/comparison_deepblink_cell_sizes.pdf b/paper/outputs/panels/comparison_deepblink_cell_sizes.pdf
diff --git a/paper/outputs/panels/comparison_deepblink_microtubule.pdf b/paper/outputs/panels/comparison_deepblink_microtubule.pdf
diff --git a/paper/outputs/panels/comparison_deepblink_particle.pdf b/paper/outputs/panels/comparison_deepblink_particle.pdf
diff --git a/paper/outputs/panels/comparison_deepblink_receptor.pdf b/paper/outputs/panels/comparison_deepblink_receptor.pdf
diff --git a/paper/outputs/panels/comparison_deepblink_smfish.pdf b/paper/outputs/panels/comparison_deepblink_smfish.pdf
diff --git a/paper/outputs/panels/comparison_deepblink_suntag.pdf b/paper/outputs/panels/comparison_deepblink_suntag.pdf
diff --git a/paper/outputs/panels/comparison_deepblink_vesicle.pdf b/paper/outputs/panels/comparison_deepblink_vesicle.pdf
diff --git a/paper/outputs/panels/comparison_piscis_loss_functions.pdf b/paper/outputs/panels/comparison_piscis_loss_functions.pdf
diff --git a/...21_183732_211__ChannelDAPI,CY3,A594,CY5,Brightfield_Seq0000_crop1to1407_14Jan2019_CY5.pdf b/...21_183732_211__ChannelDAPI,CY3,A594,CY5,Brightfield_Seq0000_crop1to1407_14Jan2019_CY5.pdf
diff --git a/...oss_functions_20220612_101953_317__Well2_ChannelDAPI,CY3,A594,Brightfield_Seq0001_CY3.pdf b/...oss_functions_20220612_101953_317__Well2_ChannelDAPI,CY3,A594,Brightfield_Seq0001_CY3.pdf
diff --git a/paper/outputs/panels/comparison_piscis_loss_functions_A3_GFP1_A594.pdf b/paper/outputs/panels/comparison_piscis_loss_functions_A3_GFP1_A594.pdf
diff --git a/paper/outputs/panels/comparison_piscis_loss_functions_A3_GFP1_CY3.pdf b/paper/outputs/panels/comparison_piscis_loss_functions_A3_GFP1_CY3.pdf
diff --git a/paper/outputs/panels/comparison_piscis_loss_functions_A3_GFP1_CY5.pdf b/paper/outputs/panels/comparison_piscis_loss_functions_A3_GFP1_CY5.pdf
diff --git a/...panels/comparison_piscis_loss_functions_ChannelDAPI,A594,YFP,Brightfield_Seq0000_A594.pdf b/...panels/comparison_piscis_loss_functions_ChannelDAPI,A594,YFP,Brightfield_Seq0000_A594.pdf
diff --git a/.../comparison_piscis_loss_functions_Well2_ChannelDAPI_DMin,CY3,A594,CY5,CY7_Seq0000_CY5.pdf b/.../comparison_piscis_loss_functions_Well2_ChannelDAPI_DMin,CY3,A594,CY5,CY7_Seq0000_CY5.pdf
diff --git a/paper/outputs/panels/comparison_piscis_loss_functions_microtubule_subset.pdf b/paper/outputs/panels/comparison_piscis_loss_functions_microtubule_subset.pdf
diff --git a/paper/outputs/panels/comparison_piscis_loss_functions_particle_subset.pdf b/paper/outputs/panels/comparison_piscis_loss_functions_particle_subset.pdf
diff --git a/paper/outputs/panels/comparison_piscis_loss_functions_receptor_subset.pdf b/paper/outputs/panels/comparison_piscis_loss_functions_receptor_subset.pdf
diff --git a/paper/outputs/panels/comparison_piscis_loss_functions_untreated014_A594.pdf b/paper/outputs/panels/comparison_piscis_loss_functions_untreated014_A594.pdf
diff --git a/paper/outputs/panels/comparison_piscis_loss_functions_untreated014_CY5.pdf b/paper/outputs/panels/comparison_piscis_loss_functions_untreated014_CY5.pdf
diff --git a/paper/outputs/panels/comparison_piscis_loss_functions_vesicle_subset.pdf b/paper/outputs/panels/comparison_piscis_loss_functions_vesicle_subset.pdf
diff --git a/paper/outputs/panels/example.pdf b/paper/outputs/panels/example.pdf
diff --git a/paper/outputs/panels/example_crop.pdf b/paper/outputs/panels/example_crop.pdf
diff --git a/paper/outputs/panels/example_crop_displacements.pdf b/paper/outputs/panels/example_crop_displacements.pdf
diff --git a/paper/outputs/panels/example_crop_ground_truth.pdf b/paper/outputs/panels/example_crop_ground_truth.pdf
diff --git a/paper/outputs/panels/example_crop_hypothetical_pooled_labels.pdf b/paper/outputs/panels/example_crop_hypothetical_pooled_labels.pdf
diff --git a/paper/outputs/panels/example_crop_hypothetical_pooled_labels_annotated.pdf b/paper/outputs/panels/example_crop_hypothetical_pooled_labels_annotated.pdf
diff --git a/paper/outputs/panels/example_crop_labels.pdf b/paper/outputs/panels/example_crop_labels.pdf
diff --git a/paper/outputs/panels/example_crop_piscis.pdf b/paper/outputs/panels/example_crop_piscis.pdf
diff --git a/paper/outputs/panels/example_crop_pooled_labels.pdf b/paper/outputs/panels/example_crop_pooled_labels.pdf
diff --git a/paper/outputs/panels/example_deepblink.pdf b/paper/outputs/panels/example_deepblink.pdf
diff --git a/paper/outputs/panels/example_ground_truth.pdf b/paper/outputs/panels/example_ground_truth.pdf
diff --git a/paper/outputs/panels/example_piscis.pdf b/paper/outputs/panels/example_piscis.pdf
diff --git a/paper/outputs/panels/example_rs_fish.pdf b/paper/outputs/panels/example_rs_fish.pdf
diff --git a/paper/outputs/panels/example_rs_fish_sigma_1.0_threshold_0.001.pdf b/paper/outputs/panels/example_rs_fish_sigma_1.0_threshold_0.001.pdf
diff --git a/paper/outputs/panels/example_rs_fish_sigma_1.0_threshold_0.005.pdf b/paper/outputs/panels/example_rs_fish_sigma_1.0_threshold_0.005.pdf
diff --git a/paper/outputs/panels/example_rs_fish_sigma_1.0_threshold_0.009.pdf b/paper/outputs/panels/example_rs_fish_sigma_1.0_threshold_0.009.pdf
diff --git a/paper/outputs/panels/example_rs_fish_sigma_1.5_threshold_0.001.pdf b/paper/outputs/panels/example_rs_fish_sigma_1.5_threshold_0.001.pdf
diff --git a/paper/outputs/panels/example_rs_fish_sigma_1.5_threshold_0.005.pdf b/paper/outputs/panels/example_rs_fish_sigma_1.5_threshold_0.005.pdf
diff --git a/paper/outputs/panels/example_rs_fish_sigma_1.5_threshold_0.009.pdf b/paper/outputs/panels/example_rs_fish_sigma_1.5_threshold_0.009.pdf
diff --git a/paper/outputs/panels/example_rs_fish_sigma_2.0_threshold_0.001.pdf b/paper/outputs/panels/example_rs_fish_sigma_2.0_threshold_0.001.pdf
diff --git a/paper/outputs/panels/example_rs_fish_sigma_2.0_threshold_0.005.pdf b/paper/outputs/panels/example_rs_fish_sigma_2.0_threshold_0.005.pdf
diff --git a/paper/outputs/panels/example_rs_fish_sigma_2.0_threshold_0.009.pdf b/paper/outputs/panels/example_rs_fish_sigma_2.0_threshold_0.009.pdf
diff --git a/paper/outputs/panels/example_trackmate.pdf b/paper/outputs/panels/example_trackmate.pdf
diff --git a/paper/outputs/panels/example_trackmate_radius_1.0_threshold_0.03.pdf b/paper/outputs/panels/example_trackmate_radius_1.0_threshold_0.03.pdf
diff --git a/paper/outputs/panels/example_trackmate_radius_1.0_threshold_0.06.pdf b/paper/outputs/panels/example_trackmate_radius_1.0_threshold_0.06.pdf
diff --git a/paper/outputs/panels/example_trackmate_radius_1.0_threshold_0.09.pdf b/paper/outputs/panels/example_trackmate_radius_1.0_threshold_0.09.pdf
diff --git a/paper/outputs/panels/example_trackmate_radius_1.5_threshold_0.03.pdf b/paper/outputs/panels/example_trackmate_radius_1.5_threshold_0.03.pdf
diff --git a/paper/outputs/panels/example_trackmate_radius_1.5_threshold_0.06.pdf b/paper/outputs/panels/example_trackmate_radius_1.5_threshold_0.06.pdf
diff --git a/paper/outputs/panels/example_trackmate_radius_1.5_threshold_0.09.pdf b/paper/outputs/panels/example_trackmate_radius_1.5_threshold_0.09.pdf
diff --git a/paper/outputs/panels/example_trackmate_radius_2.0_threshold_0.03.pdf b/paper/outputs/panels/example_trackmate_radius_2.0_threshold_0.03.pdf
diff --git a/paper/outputs/panels/example_trackmate_radius_2.0_threshold_0.06.pdf b/paper/outputs/panels/example_trackmate_radius_2.0_threshold_0.06.pdf
diff --git a/paper/outputs/panels/example_trackmate_radius_2.0_threshold_0.09.pdf b/paper/outputs/panels/example_trackmate_radius_2.0_threshold_0.09.pdf
diff --git a/paper/outputs/panels/f1_score_estimation_dice.pdf b/paper/outputs/panels/f1_score_estimation_dice.pdf
diff --git a/paper/outputs/panels/f1_score_estimation_smoothf1.pdf b/paper/outputs/panels/f1_score_estimation_smoothf1.pdf
diff --git a/paper/outputs/panels/lung_cancer.pdf b/paper/outputs/panels/lung_cancer.pdf
diff --git a/paper/outputs/panels/lung_cancer_ground_truth.pdf b/paper/outputs/panels/lung_cancer_ground_truth.pdf
diff --git a/paper/outputs/panels/macrophages.pdf b/paper/outputs/panels/macrophages.pdf
diff --git a/paper/outputs/panels/macrophages_ground_truth.pdf b/paper/outputs/panels/macrophages_ground_truth.pdf
diff --git a/paper/outputs/panels/melanoma_mice.pdf b/paper/outputs/panels/melanoma_mice.pdf
diff --git a/paper/outputs/panels/melanoma_mice_ground_truth.pdf b/paper/outputs/panels/melanoma_mice_ground_truth.pdf
diff --git a/paper/outputs/panels/small_offset_tolerance.pdf b/paper/outputs/panels/small_offset_tolerance.pdf
diff --git a/paper/outputs/panels/small_offset_tolerance_histogram_sigma_0.01.pdf b/paper/outputs/panels/small_offset_tolerance_histogram_sigma_0.01.pdf
diff --git a/paper/outputs/panels/small_offset_tolerance_histogram_sigma_0.1.pdf b/paper/outputs/panels/small_offset_tolerance_histogram_sigma_0.1.pdf
diff --git a/paper/outputs/panels/small_offset_tolerance_histogram_sigma_0.2.pdf b/paper/outputs/panels/small_offset_tolerance_histogram_sigma_0.2.pdf
diff --git a/paper/outputs/panels/small_offset_tolerance_histogram_sigma_0.5.pdf b/paper/outputs/panels/small_offset_tolerance_histogram_sigma_0.5.pdf
diff --git a/paper/outputs/panels/small_offset_tolerance_histogram_sigma_1.0.pdf b/paper/outputs/panels/small_offset_tolerance_histogram_sigma_1.0.pdf
diff --git a/paper/outputs/panels/spot_omission_example_1.pdf b/paper/outputs/panels/spot_omission_example_1.pdf
diff --git a/paper/outputs/panels/spot_omission_example_1_deepblink.pdf b/paper/outputs/panels/spot_omission_example_1_deepblink.pdf
diff --git a/paper/outputs/panels/spot_omission_example_1_ground_truth.pdf b/paper/outputs/panels/spot_omission_example_1_ground_truth.pdf
diff --git a/paper/outputs/panels/spot_omission_example_1_piscis.pdf b/paper/outputs/panels/spot_omission_example_1_piscis.pdf
diff --git a/paper/outputs/panels/spot_omission_example_2.pdf b/paper/outputs/panels/spot_omission_example_2.pdf
diff --git a/paper/outputs/panels/spot_omission_example_2_deepblink.pdf b/paper/outputs/panels/spot_omission_example_2_deepblink.pdf
diff --git a/paper/outputs/panels/spot_omission_example_2_ground_truth.pdf b/paper/outputs/panels/spot_omission_example_2_ground_truth.pdf
diff --git a/paper/outputs/panels/spot_omission_example_2_piscis.pdf b/paper/outputs/panels/spot_omission_example_2_piscis.pdf
diff --git a/paper/outputs/panels/spot_omission_histogram.pdf b/paper/outputs/panels/spot_omission_histogram.pdf