Zarr backend for DelayedArray objects
if (!require("devtools", quietly = TRUE))
install.packages("devtools")
devtools::install_github("BIMSBbioinfo/ZarrArray")The main usage of the ZarrArray is to deliver DelayedArray operations for zarr arrays.
mat <- array(data=1:1000, dim=c(20, 50))
mat <- writeZarrArray(mat, filepath = "data/mat.zarr", name = "assay")
mat<20 x 50> ZarrMatrix object of type "double":
[,1] [,2] [,3] ... [,49] [,50]
[1,] 1 21 41 . 961 981
[2,] 2 22 42 . 962 982
[3,] 3 23 43 . 963 983
[4,] 4 24 44 . 964 984
[5,] 5 25 45 . 965 985
... . . . . . .
[16,] 16 36 56 . 976 996
[17,] 17 37 57 . 977 997
[18,] 18 38 58 . 978 998
[19,] 19 39 59 . 979 999
[20,] 20 40 60 . 980 1000
However, Zarr arrays could be constructed for in-memory arrays as well.
mat <- array(data=1:1000, dim=c(20, 50))
mat <- ZarrArray(mat)
mat<20 x 50> ZarrMatrix object of type "double":
[,1] [,2] [,3] ... [,49] [,50]
[1,] 1 21 41 . 961 981
[2,] 2 22 42 . 962 982
[3,] 3 23 43 . 963 983
[4,] 4 24 44 . 964 984
[5,] 5 25 45 . 965 985
... . . . . . .
[16,] 16 36 56 . 976 996
[17,] 17 37 57 . 977 997
[18,] 18 38 58 . 978 998
[19,] 19 39 59 . 979 999
[20,] 20 40 60 . 980 1000