Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

fix: set singularity cachedir inside workdir #37

Merged
merged 6 commits into from
Sep 12, 2024
Merged

fix: set singularity cachedir inside workdir #37

merged 6 commits into from
Sep 12, 2024

Conversation

kelly-sovacool
Copy link
Member

@kelly-sovacool kelly-sovacool commented Sep 10, 2024

Changes

Set the singularity cachedir to /data/$USER/.singularity or $WORKDIR/.singularity if --singcache isn't provided.

Later we will provide a more robust solution that copies previously downloaded SIFs, after CCBR/CCBR_SnakemakeTemplate#1

Issues

fix #33

PR Checklist

(Strikethrough any points that are not applicable.)

  • This comment contains a description of changes with justifications, with any relevant issues linked.
  • Update docs if there are any API changes.
  • Update CHANGELOG.md with a short description of any user-facing changes and reference the PR number. Guidelines: https://keepachangelog.com/en/1.1.0/

temporary fix #33

later we will provide a more robust solution that copies previously downloaded SIFs
@kopardev kopardev added the ASPEN RepoName label Sep 10, 2024
@kelly-sovacool
Copy link
Member Author

test in progress, job ID: 35634872

@kelly-sovacool
Copy link
Member Author

test in progress, job ID: 35634872

test was successful. @kopardev this is ready for your review.

@kelly-sovacool kelly-sovacool merged commit 2bd8110 into main Sep 12, 2024
@kelly-sovacool kelly-sovacool deleted the iss-33 branch September 12, 2024 21:12
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
ASPEN RepoName
Projects
None yet
Development

Successfully merging this pull request may close these issues.

set default singularity cache directory to $WORKDIR/.singularity
2 participants